PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02366.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 376aa    MW: 41930.9 Da    PI: 8.9676
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02366.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.14.1e-54341611128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeel+++yL +k+++ ++++ ++i +vd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ ++el
  PK02366.1  34 LPPGFRFHPTDEELITFYLINKISDPTFTA-RAIGDVDLNKSEPWELPAKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSvTSEL 132
                79*************************999.89***************99999****************************************9989999 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfy+grap+gek++Wvmheyr+
  PK02366.1 133 VGMKKTLVFYRGRAPRGEKSNWVMHEYRI 161
                ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6232182IPR003441NAC domain
PROSITE profilePS5100560.35934182IPR003441NAC domain
PfamPF023659.9E-2835161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MKETSSHQKE KEEIRRDMGG GSSDDNKVDT TEKLPPGFRF HPTDEELITF YLINKISDPT  60
FTARAIGDVD LNKSEPWELP AKAKMGEKEW YFFSLRDRKY PTGVRTNRAT NTGYWKTTGK  120
DKEIFNSVTS ELVGMKKTLV FYRGRAPRGE KSNWVMHEYR INSKSAFRTS KDEWVVCRVF  180
QKSAGAKKYP TTSTQTRTMN PYALIDQTQT MLQYSSPMMQ LPGDPTGHFL FARNNCNNIT  240
NNPHELAELS RVLRGTTSGS TNPLNILPSQ YNYPVPILPG GGGGGGGGGG CLTISGLNLN  300
LGGAPPPQAP PHQAQMMNLN QHNIMSSNSG SFGHHDHNNG YGSEMNNVPN NGAANNNRSY  360
MNVDHCMDLE NYWPAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-553018813171NO APICAL MERISTEM PROTEIN
1ut4_B7e-553018813171NO APICAL MERISTEM PROTEIN
1ut7_A7e-553018813171NO APICAL MERISTEM PROTEIN
1ut7_B7e-553018813171NO APICAL MERISTEM PROTEIN
4dul_A7e-553018813171NAC domain-containing protein 19
4dul_B7e-553018813171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015885188.11e-146NAC domain-containing protein 79 isoform X3
TrEMBLA0A2P5G1G01e-168A0A2P5G1G0_TREOI; NAC domain containing protein
STRINGcassava4.1_011442m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-108NAC domain containing protein 38