PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02218.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ARF
Protein Properties Length: 660aa    MW: 73901.7 Da    PI: 6.181
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02218.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.71.2e-24127228199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f+kvlt sd++++g +++ +k+a+e+       +  ++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+
  PK02218.1 127 FCKVLTASDTSTHGGFSVLRKHATEClpqldmtQ--STPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGESGELR 222
                99**************************999644..444569************************************************..44999*** PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                v+v+r+
  PK02218.1 223 VGVRRH 228
                ****97 PP
2Auxin_resp1033.7e-34253332183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+st++ F v+Y+Pr+  s+F+++++k+++a+++k++vGmRfkm+fe+eds+err+sGt+vgv d+ p +W +S+WrsLk
   PK02218.1 253 ASHAVSTQTLFVVYYKPRT--SQFIISLNKYLEAVNNKYAVGMRFKMRFEGEDSPERRFSGTIVGVDDICP-QWVDSNWRSLK 332
                 789***************6..9**********************************************999.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.5E-40116256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.0E-40121242IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.9E-23127229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.252127229IPR003340B3 DNA binding domain
CDDcd100178.61E-20127227No hitNo description
PfamPF023621.2E-22127228IPR003340B3 DNA binding domain
PfamPF065076.5E-32253332IPR010525Auxin response factor
PfamPF023091.3E-8523631IPR033389AUX/IAA domain
SuperFamilySSF542779.32E-11542623No hitNo description
PROSITE profilePS5174525.028547628IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MSNRGVAGSF SQPNVAAEGD DLYPELWKAC AGPLVDVPQN GERVFYFPQG HMEQLEASTN  60
QELNQRIPLF NLPPKILCRV LNVQLMAEQE SDEVYAQITL VPESNQMEPT SPDPCIPEPQ  120
RPTAHTFCKV LTASDTSTHG GFSVLRKHAT ECLPQLDMTQ STPTQELVAK DLHGYEWRFK  180
HIFRGQPRRH LLTTGWSTFV TSKRLVAGDS FVFLRGESGE LRVGVRRHAR QPSSMPSSVI  240
SSQSMHLGVL ATASHAVSTQ TLFVVYYKPR TSQFIISLNK YLEAVNNKYA VGMRFKMRFE  300
GEDSPERRFS GTIVGVDDIC PQWVDSNWRS LKVQWDEAAS IHRPDRVSPW EIEPSAPGSL  360
AQPAPVVKNK RPRPINDNMS LDTSNSTTSA VWNYGMTQSH DTTQLSVAPE ANKRNENHSF  420
WRHRQQDGWI SSPHQTGSHI FQDTTEDSKS ISISPLFSKQ NNDQTSDQCD KGRKTETNSS  480
FRLFGVEVTD HSTNSSTITD GLVSTVLVTD SEQKSELSKA SKEMITEQLQ SSSKESQTKQ  540
SSSTSSRSRT KVQMQGVAVG RAVDLSTLEG YSQLIDELEE MFDIKGQLRP RNKWEIVFTD  600
DEGDMMLLGD DLWQEFCAIV RRIFICSSQD VKKMKSGSKL PMLSSLEGET TVISSESAEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1762035417354Auxin response factor 1
4ldw_A1e-1762035417354Auxin response factor 1
4ldw_B1e-1762035417354Auxin response factor 1
4ldx_A1e-1762035417354Auxin response factor 1
4ldx_B1e-1762035417354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369373KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024030109.10.0auxin response factor 9
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2P5D6Q70.0A0A2P5D6Q7_TREOI; Auxin response factor
STRINGXP_002518850.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9