PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK02169.2

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bZIP

Protein Properties

Length: 367aa MW: 39106 Da PI: 10.0347

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK02169.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.7	1.4e-14	313	356	5	48
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ PK02169.2 313 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEKNEELRKK 356 79****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-12	309	367	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.128	311	356	IPR004827	Basic-leucine zipper domain
CDD	cd14707	4.27E-27	313	358	No hit	No description
SuperFamily	SSF57959	5.31E-11	313	357	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.6E-14	313	356	No hit	No description
Pfam	PF00170	2.6E-12	313	356	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	316	331	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
SLTFDEFQST VGGIGKDFGS MNMDELLKNI WSAEEIQSMA SVGPSNTGQT GVGAPLQKQG 60 SLTLPRTLSQ KTVDEVWRDL SKDGSGAAGP NLPQRQQTLG EMTLEEFLVR AGVVREDNQM 120 AGKPPNNSGF FGDLSCSVNN HNTGLGISFE QANRAATMVG NRIPDTNNQI SIQAANLPLN 180 VNGVRSTQQH LAQQQHQGLA QQQIFPKQPT VSYASQLPLQ TGGQLGSPGV RGGIMGITDQ 240 GLSNALVQGG GMGMVGLGGG AVTMGTGSPA NQISSDGMKS NGDTSSVSPV PFVFNGGLRG 300 RKCSGAVEKV VERRQRRMIK NRESAARSRA RKQAYTMELE AEVAKLKEKN EELRKKQVIS 360 VTKFLYV

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

SLTFDEFQST VGGIGKDFGS MNMDELLKNI WSAEEIQSMA SVGPSNTGQT GVGAPLQKQG  60
SLTLPRTLSQ KTVDEVWRDL SKDGSGAAGP NLPQRQQTLG EMTLEEFLVR AGVVREDNQM  120
AGKPPNNSGF FGDLSCSVNN HNTGLGISFE QANRAATMVG NRIPDTNNQI SIQAANLPLN  180
VNGVRSTQQH LAQQQHQGLA QQQIFPKQPT VSYASQLPLQ TGGQLGSPGV RGGIMGITDQ  240
GLSNALVQGG GMGMVGLGGG AVTMGTGSPA NQISSDGMKS NGDTSSVSPV PFVFNGGLRG  300
RKCSGAVEKV VERRQRRMIK NRESAARSRA RKQAYTMELE AEVAKLKEKN EELRKKQVIS  360
VTKFLYV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	344	355	KLKEKNEELRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024031695.1	1e-169	ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X1
Swissprot	Q9M7Q4	1e-115	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A2P5CVH7	1e-173	A0A2P5CVH7_PARAD; Basic-leucine zipper transcription factor
STRING	XP_010112189.1	1e-169	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1962	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-100	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]