PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK02169.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bZIP

Protein Properties

Length: 427aa MW: 45879.6 Da PI: 10.2804

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK02169.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.6	1.8e-15	349	402	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ee ++ +k PK02169.1 349 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEKNEELRKKQEEFVEMHKK 402 79****************************************998888777664 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.4E-13	345	406	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.254	347	396	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.2E-14	349	397	No hit	No description
SuperFamily	SSF57959	1.19E-10	349	398	No hit	No description
Pfam	PF00170	4.5E-13	349	402	IPR004827	Basic-leucine zipper domain
CDD	cd14707	2.79E-27	349	395	No hit	No description
PROSITE pattern	PS00036	0	352	367	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MGSNLNFKGT GNEPSANGGG GRPPANNHLV RQSSIYSLTF DEFQSTVGGI GKDFGSMNMD 60 ELLKNIWSAE EIQSMASVGP SNTGQTGVGA PLQKQGSLTL PRTLSQKTVD EVWRDLSKDG 120 SGAAGPNLPQ RQQTLGEMTL EEFLVRAGVV REDNQMAGKP PNNSGFFGDL SCSVNNHNTG 180 LGISFEQANR AATMVGNRIP DTNNQISIQA ANLPLNVNGV RSTQQHLAQQ QHQGLAQQQI 240 FPKQPTVSYA SQLPLQTGGQ LGSPGVRGGI MGITDQGLSN ALVQGGGMGM VGLGGGAVTM 300 GTGSPANQIS SDGMKSNGDT SSVSPVPFVF NGGLRGRKCS GAVEKVVERR QRRMIKNRES 360 AARSRARKQA YTMELEAEVA KLKEKNEELR KKQEEFVEMH KKQVMEMINL QREVKKRCLR 420 RTQTGPW

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MGSNLNFKGT GNEPSANGGG GRPPANNHLV RQSSIYSLTF DEFQSTVGGI GKDFGSMNMD  60
ELLKNIWSAE EIQSMASVGP SNTGQTGVGA PLQKQGSLTL PRTLSQKTVD EVWRDLSKDG  120
SGAAGPNLPQ RQQTLGEMTL EEFLVRAGVV REDNQMAGKP PNNSGFFGDL SCSVNNHNTG  180
LGISFEQANR AATMVGNRIP DTNNQISIQA ANLPLNVNGV RSTQQHLAQQ QHQGLAQQQI  240
FPKQPTVSYA SQLPLQTGGQ LGSPGVRGGI MGITDQGLSN ALVQGGGMGM VGLGGGAVTM  300
GTGSPANQIS SDGMKSNGDT SSVSPVPFVF NGGLRGRKCS GAVEKVVERR QRRMIKNRES  360
AARSRARKQA YTMELEAEVA KLKEKNEELR KKQEEFVEMH KKQVMEMINL QREVKKRCLR  420
RTQTGPW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	380	391	KLKEKNEELRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015884344.1	0.0	bZIP transcription factor TRAB1 isoform X1
Refseq	XP_015884345.1	0.0	bZIP transcription factor TRAB1 isoform X1
Swissprot	Q9M7Q4	1e-131	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A2P5CVH7	0.0	A0A2P5CVH7_PARAD; Basic-leucine zipper transcription factor
STRING	EOY14438	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1962	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-114	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]