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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK02140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | SBP | ||||||||
Protein Properties | Length: 188aa MW: 21275.2 Da PI: 8.7525 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 136.2 | 1e-42 | 97 | 173 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls++++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ PK02140.1 97 CLVDGCNADLSTCRDYHRRHKVCELHSKTPQVTIGGEKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 173 **************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.6E-35 | 90 | 158 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.052 | 94 | 171 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-39 | 95 | 176 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.5E-32 | 97 | 170 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MDWNSKAPPS WEFTELEQQT FSNLGTVNGD YNKIIREDFS VDLKLGQVGN CSNNDLVDAT 60 WKESGVPRHV PSSSSSSPSG SSKRSRGSYN GSQTVSCLVD GCNADLSTCR DYHRRHKVCE 120 LHSKTPQVTI GGEKQRFCQQ CSRFHSLEEF DEGKRSCRKR LDGHNRRRRK PQPEPFSRYG 180 SLVSTYSX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-30 | 87 | 170 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 153 | 170 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007209206.1 | 5e-94 | squamosa promoter-binding-like protein 13A | ||||
Refseq | XP_020420484.1 | 5e-94 | squamosa promoter-binding-like protein 13A | ||||
Swissprot | B9DI20 | 7e-50 | SP13A_ARATH; Squamosa promoter-binding-like protein 13A | ||||
Swissprot | P0DI11 | 7e-50 | SP13B_ARATH; Squamosa promoter-binding-like protein 13B | ||||
TrEMBL | A0A2P5FD90 | 1e-92 | A0A2P5FD90_TREOI; SBP-box transcription factor | ||||
TrEMBL | M5WUE7 | 1e-92 | M5WUE7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ10405 | 2e-93 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2591 | 33 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 2e-49 | SBP family protein |
Publications ? help Back to Top | |||
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