PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02019.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 860aa    MW: 96005.7 Da    PI: 4.2203
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02019.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.7e-5191431127
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                lp GfrF+Ptdeel+++yL+ k++g++ e+ evi+e+d++k+eP+dLp  + +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++ s+   
  PK02019.1   9 LPLGFRFRPTDEELINHYLRLKINGRHSEV-EVIPEIDVCKWEPSDLPglSVIKTDDPEWFFFCPRDRKYPNGQRSNRATSAGYWKATGKDRTIRSRsyr 107
                699************************999.99***************6447888899**************************************9877 PP

        NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyr 127
                    ++ ++g+kktLvfy+grapkg++t+W+mheyr
  PK02019.1 108 satnTTGAIGMKKTLVFYRGRAPKGVRTHWIMHEYR 143
                66555555***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.29E-587167IPR003441NAC domain
PROSITE profilePS5100555.8049167IPR003441NAC domain
PfamPF023651.1E-2610143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 860 aa     Download sequence    Send to blast
MGEVSFEKLP LGFRFRPTDE ELINHYLRLK INGRHSEVEV IPEIDVCKWE PSDLPGLSVI  60
KTDDPEWFFF CPRDRKYPNG QRSNRATSAG YWKATGKDRT IRSRSYRSAT NTTGAIGMKK  120
TLVFYRGRAP KGVRTHWIMH EYRPTLKDLD GTGPGQDAYV LCRLFRKTEE KPDAPKYDEV  180
DQTGLSPTAT KSSPDDTSSD LLQESATSNM AAGEESEVIN RWLTDQSDKM TQSAQAPVES  240
GSTSYMTSDV EDHVIDETPL EVPMMEENSK FSEVNALTDY AAISSFNSQI EQPLYADSPF  300
ACDFGNDDNV IPFMDGTAEQ DISLTDLLDE VFQSHDEKLD SQKNSTVGKE THLYAQAQSL  360
QNIPPRSLYN GPYNNMGANM NQHDVDTRAS TWYNGQMDAK DMLLMPTQFG PSRVDEPLNN  420
QEFVTGNLGA PGGNFVGQVS VAGDYSMYNN LEESISRNLP DYQYSHIGRP EIKFKPRQPQ  480
RPSYGFNNTQ GIAGRRLRLN VNSSHESTAN DIGCDRSKSH EEEEVQSTAT EVFKAEESDV  540
NPNGDLGSGT GIKIRTRESQ PEPSSDNFIS QGDSLRRLRL QINTMPQSVA NDNLKGVGQN  600
KESEEVQSNI TEDTVEGAKE RERERKNGVK STSTEDSLDV NYSEKEDELL SISSQDSVDA  660
ENSETEDELE SISSEDFLED VNNSEGEDEL QSVSAEDSMD DANDSEKELW SISTEDNVDD  720
VNNSEIEDEV EPTSTESPCL DEANKESHHP LMFDTATEIA RESFTEGEDK SEETIEVSSI  780
KELNKEILDR SSLAKPSFRE EMKDKFPGNS PTEASESLEK LSRHPVSAYS FVISFGVSAA  840
IVLLLVSFGW RALDVGVAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-42917015171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026857.10.0protein NTM1-like 9 isoform X1
TrEMBLA0A2P5FIU10.0A0A2P5FIU1_TREOI; NAC domain containing protein
STRINGXP_010104895.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136251825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.21e-127NAC 014