PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK01836.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 182aa MW: 21191.3 Da PI: 10.3949

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK01836.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.7	1.5e-26	17	106	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYA++vGF vr+ + ++s +g++ r++ C+k+g++ +++ + e+++r++ r gC+a++ vk+ek+gkw+vt+++++HnH+l+ PK01836.1 17 RFYIEYARRVGFVVRVMQRRRSGIDGRTLARRLGCNKQGFSPNQRAAIGPEKKPRPSAREGCNATILVKMEKSGKWVVTRFVKDHNHPLV 106 5***************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-24	17	106	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MQPYVGMEFD SEDDARRFYI EYARRVGFVV RVMQRRRSGI DGRTLARRLG CNKQGFSPNQ 60 RAAIGPEKKP RPSAREGCNA TILVKMEKSG KWVVTRFVKD HNHPLVITAN GFSTEGDKDK 120 KIEELTMELK HQEHLCVTYR ENLLSFMKNV EEQTEELSGK IQVIVENVRR VESKLQKHSR 180 RR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024933083.1	1e-120	protein FAR1-RELATED SEQUENCE 5 isoform X1
Swissprot	Q9SZL8	5e-23	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2P5CY12	1e-119	A0A2P5CY12_TREOI; Uncharacterized protein (Fragment)
STRING	XP_010095602.1	1e-117	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	5e-74	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]