PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01630.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 280aa    MW: 31188.7 Da    PI: 8.7893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01630.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.3e-1384130354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                ++h+++E+rRRdriN  + +Lr+l+Pk+      K++Ka+ L  +++++k+L
  PK01630.1  84 KSHSQAEKRRRDRINAQLTTLRKLIPKS-----DKMDKAALLGSVIDHVKEL 130
                79*************************8.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.41581130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1383138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-1184130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.92E-1184133No hitNo description
Gene3DG3DSA:4.10.280.102.7E-1584133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1287136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2608.3E-4181231No hitNo description
CDDcd048733.62E-6182249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
XHQQHQYSSS PQPNGENFSH YNKNDESFLV PYWHLPLDDE HHNNHVLATS SAFQFCGFPS  60
SSSSSTFPND SSFGPEDKAA AASKSHSQAE KRRRDRINAQ LTTLRKLIPK SDKMDKAALL  120
GSVIDHVKEL KRKAGEVSKY SVVPTEIDEI IIESNLSDQD YVRLSEAGAN KNCDNVNYIK  180
ASVCCEDRPE LFSELIQVFK GLNLTAVRAD VVSIGGRIKS VLILSSKNNE HGNTSVCINT  240
LKQSLKLVLS KISSSSSMAT TCRIRSKRQR FFLPSSHFPQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105437.11e-111transcription factor bHLH51
TrEMBLA0A2P5EM791e-143A0A2P5EM79_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010105437.11e-111(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57963351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-41bHLH family protein