PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01498.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 81aa    MW: 9174.26 Da    PI: 10.3199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01498.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-131764254
               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               +++h+e+ErrRR+riN  +++Lr+llP+      +K +Ka+ L ++v+ +k+L
  PK01498.1 17 CKSHKEAERRRRQRINAHLSTLRSLLPNI-----TKTDKASLLAEVVHRVKEL 64
               689*************************7.....6************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.88E-101369No hitNo description
PROSITE profilePS5088815.4971564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-111764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.02E-151873IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-141971IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-122170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MDGGDSIVSS ASKSETCKSH KEAERRRRQR INAHLSTLRS LLPNITKTDK ASLLAEVVHR  60
VKELREKVAE VVRKDGEIWC X
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107684.15e-37transcription factor bHLH30
SwissprotQ9XEF09e-15BH051_ARATH; Transcription factor bHLH51
TrEMBLA0A2P5E1A38e-42A0A2P5E1A3_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_010107684.12e-36(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-17bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]