PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PK01489.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 87aa MW: 9859.94 Da PI: 7.0835

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK01489.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	30.9	4.8e-10	35	86	14	69
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHH CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFv 69 + lp kf++e +++ +++ +led g++W+v++ ++ +g+ +++GW++F+ PK01489.1 35 ECPFLPPKFVKELSLVA--GQKAILEDAYGEQWDVRI--SRVKGSLAFEQGWSKFA 86 44689******9995..458***********..999999********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.55E-10	22	86	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.1E-7	24	86	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.6E-10	35	86	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	9.601	39	87	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
XCAQCTRSCW LIHEGKPACS ASSFLKIMFD MQEFECPFLP PKFVKELSLV AGQKAILEDA 60 YGEQWDVRIS RVKGSLAFEQ GWSKFAX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024025037.1	2e-22	B3 domain-containing protein Os01g0905400, partial
TrEMBL	A0A2P5EIB0	1e-22	A0A2P5EIB0_TREOI; B3 DNA binding domain containing protein
STRING	XP_010101937.1	1e-20	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12476	28	28