PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01265.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family AP2
Protein Properties Length: 477aa    MW: 52696.9 Da    PI: 6.8872
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01265.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59.2e-15191250155
        AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  PK01265.2 191 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 250
                57*******************666664478446*************************98 PP
2AP2507.4e-16293344155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  PK01265.2 293 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 344
                57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.09E-22191260No hitNo description
PfamPF008471.4E-11191250IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-17191260IPR016177DNA-binding domain
PROSITE profilePS5103219.335192258IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-16192259IPR001471AP2/ERF domain
SMARTSM003806.6E-29192264IPR001471AP2/ERF domain
PRINTSPR003673.7E-6193204IPR001471AP2/ERF domain
CDDcd000183.77E-11293352No hitNo description
SuperFamilySSF541718.5E-18293353IPR016177DNA-binding domain
PfamPF008473.1E-10293344IPR001471AP2/ERF domain
PROSITE profilePS5103219.111294352IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-18294352IPR001471AP2/ERF domain
SMARTSM003807.9E-31294358IPR001471AP2/ERF domain
PRINTSPR003673.7E-6334354IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MHSCIWDFAW SNQKSQVFFP DGEDHQGKHN GHSASIAESP VLTSFIDPRT QNHHPVPKLE  60
DFLGDSSSLV RYSDSQTETQ DSSLTQIYDH SSAYFNDQHQ DLKAVTAFQA FSTNSGSEVD  120
DSASIPRAQL SCSEFTGTHS IESSGNELAF SSCPTGSLSL AVTTQTSEKA IVPAATDSTK  180
KISDTFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQVYLGG YDKEEKAARA  240
YDLAALKYWG ATATTNFPVS NYSKELEEMK HVTKQEFIAS LRRKSSGFSR GASIYRGVTR  300
HHQQGRWQAR IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGINAVTN FEMNRYDVEA  360
IAKSALPVGG AAKRLKLSLE AEEKPSINHH DHQNQCNNTG GNSNSNNISF SAMQPASTIP  420
CGIPFDAATA AIYHQNLFHH YQSNYLGNSD TTAGSSPAMG GMIPQPAEFF IWPHQTY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024032930.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A2P5EGR70.0A0A2P5EGR7_TREOI; AP2/ERF transcription factor
STRINGXP_010113448.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.10.0AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]