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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK01265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | AP2 | ||||||||
Protein Properties | Length: 519aa MW: 57257.8 Da PI: 6.6781 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.3 | 1e-14 | 233 | 292 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g PK01265.1 233 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 292 57*******************666664478446*************************98 PP | |||||||
2 | AP2 | 49.8 | 8.3e-16 | 335 | 386 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g PK01265.1 335 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 386 57****************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.6E-11 | 233 | 292 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-17 | 233 | 302 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.03E-23 | 233 | 302 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.3E-16 | 234 | 301 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.335 | 234 | 300 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.6E-29 | 234 | 306 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-6 | 235 | 246 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-10 | 335 | 386 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 335 | 395 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.68E-11 | 335 | 394 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.7E-18 | 336 | 394 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.111 | 336 | 394 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-31 | 336 | 400 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-6 | 376 | 396 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010080 | Biological Process | regulation of floral meristem growth | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0035265 | Biological Process | organ growth | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0060772 | Biological Process | leaf phyllotactic patterning | ||||
GO:0060774 | Biological Process | auxin mediated signaling pathway involved in phyllotactic patterning | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 519 aa Download sequence Send to blast |
MAPGTNNWLS FSLSPLEMLR SSDNNQSPFM AYDTSSTASP QYLLDSFYTN AWSNQKSQVF 60 FPDGEDHQGK HNGHSASIAE SPVLTSFIDP RTQNHHPVPK LEDFLGDSSS LVRYSDSQTE 120 TQDSSLTQIY DHSSAYFNDQ HQDLKAVTAF QAFSTNSGSE VDDSASIPRA QLSCSEFTGT 180 HSIESSGNEL AFSSCPTGSL SLAVTTQTSE KAIVPAATDS TKKISDTFGQ RTSIYRGVTR 240 HRWTGRYEAH LWDNSCRREG QARKGRQVYL GGYDKEEKAA RAYDLAALKY WGATATTNFP 300 VSNYSKELEE MKHVTKQEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK 360 DLYLGTFATE EEAAEAYDIA AIKFRGINAV TNFEMNRYDV EAIAKSALPV GGAAKRLKLS 420 LEAEEKPSIN HHDHQNQCNN TGGNSNSNNI SFSAMQPAST IPCGIPFDAA TAAIYHQNLF 480 HHYQSNYLGN SDTTAGSSPA MGGMIPQPAE FFIWPHQTY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00504 | DAP | Transfer from AT5G10510 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024032930.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL6 | ||||
Swissprot | Q52QU2 | 0.0 | AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6 | ||||
TrEMBL | A0A2P5EGR7 | 0.0 | A0A2P5EGR7_TREOI; AP2/ERF transcription factor | ||||
STRING | XP_010113448.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4810 | 31 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10510.2 | 0.0 | AINTEGUMENTA-like 6 |
Publications ? help Back to Top | |||
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