PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

FAR1

Protein Properties

Length: 670aa MW: 77417.7 Da PI: 8.1875

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK01244.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.4	8.8e-22	63	145	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Yn YAkevGF+vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w++ ++ leHnH l PK01244.1 63 YYNCYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDTKRWRILEVTLEHNHLL 145 9***************************************9988.....99*******************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.8E-19	63	145	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.9E-27	265	358	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.718	552	588	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.2E-5	563	590	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 670 aa Download sequence Send to blast
MEEAPLSSEQ VLDPDCNEVR MDGDDLTLTA ELEGQNGVSE GRKEFVAPAL GMEFESYEDA 60 YSYYNCYAKE VGFRVRVKNS WFKRNSREKY GAVLCCSSQG FKRIKDVNRL RKETRTGCPA 120 MIRMRLVDTK RWRILEVTLE HNHLLGSKVY KSIKKMGNGV KRNCQPSNDA DVRTIKLYKA 180 LVIDSGGNGT SNPIARDPTG MFPDHPNQLN IRRGDTQALY NYLCRMQLTN PNFFYLMDLN 240 EEGRLRNVFW IDARSRAACG YFSDVIYLDN TYMSSKFEIP LVAFVGINHH GQSVLLGCGL 300 LAGETTESYI WLFKAWLTCT LGHSPQTIIT DRCKTLSSVI AEVFPRCQHR FSLSLIMKKV 360 PEKLGGLCNY DAIRKALVKA VYESMKVIEF EAAWGFMVQR FGIGDHEWLR SLYEDRVQWA 420 LVYLKDTSFA GMAAARPNEA LNAFFDKYVH KQTPLKEFLD KYELALQKRH KEEALADIES 480 RSSNPILKTR CSFELQLSKA YTREVFKKFQ YEVEEMYSCF STTQLHVDGP IVIFLVKERV 540 MSEGNRREIK DYEVLYNRTA GEVRCICSCF NFYGYLCRHS LCVLNFNGVE EIPSKYILSR 600 WKKDYKRLHI LDHGSNNIDV SDRVQWFNQM YKSALQIVEE GAISLDHYKV ALQSFEESLK 660 RVHNVDVRLE

Sequence ? help Back to Top

Protein Sequence Length: 670 aa Download sequence Send to blast

MEEAPLSSEQ VLDPDCNEVR MDGDDLTLTA ELEGQNGVSE GRKEFVAPAL GMEFESYEDA  60
YSYYNCYAKE VGFRVRVKNS WFKRNSREKY GAVLCCSSQG FKRIKDVNRL RKETRTGCPA  120
MIRMRLVDTK RWRILEVTLE HNHLLGSKVY KSIKKMGNGV KRNCQPSNDA DVRTIKLYKA  180
LVIDSGGNGT SNPIARDPTG MFPDHPNQLN IRRGDTQALY NYLCRMQLTN PNFFYLMDLN  240
EEGRLRNVFW IDARSRAACG YFSDVIYLDN TYMSSKFEIP LVAFVGINHH GQSVLLGCGL  300
LAGETTESYI WLFKAWLTCT LGHSPQTIIT DRCKTLSSVI AEVFPRCQHR FSLSLIMKKV  360
PEKLGGLCNY DAIRKALVKA VYESMKVIEF EAAWGFMVQR FGIGDHEWLR SLYEDRVQWA  420
LVYLKDTSFA GMAAARPNEA LNAFFDKYVH KQTPLKEFLD KYELALQKRH KEEALADIES  480
RSSNPILKTR CSFELQLSKA YTREVFKKFQ YEVEEMYSCF STTQLHVDGP IVIFLVKERV  540
MSEGNRREIK DYEVLYNRTA GEVRCICSCF NFYGYLCRHS LCVLNFNGVE EIPSKYILSR  600
WKKDYKRLHI LDHGSNNIDV SDRVQWFNQM YKSALQIVEE GAISLDHYKV ALQSFEESLK  660
RVHNVDVRLE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097195.2	0.0	uncharacterized protein LOC21408426
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	W9R3Q8	0.0	W9R3Q8_9ROSA; Protein FAR1-RELATED SEQUENCE 6
STRING	XP_010097195.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]