PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01104.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 254aa    MW: 29390.2 Da    PI: 8.6106
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01104.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.52.7e-49261673128
        NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....... 95 
                pGfrFhPtdeelv +yL++kv++k+l++ e ik++diyk++PwdLpk  k +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg dk+++++       
  PK01104.1  26 PGFRFHPTDEELVGFYLRRKVDKKPLRI-ELIKQIDIYKYDPWDLPKVSKVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYNSslvkegd 124
                9***************************.89***************8888899***************************************97777665 PP

        NAM  96 .kgel...........vglkktLvfykgrapkgektdWvmheyrl 128
                 +  +           +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  PK01104.1 125 hD--DhnhnnndesliIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 167
                50..055566777888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100550.36624207IPR003441NAC domain
SuperFamilySSF1019411.44E-5225207IPR003441NAC domain
PfamPF023656.0E-2526167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEEKKELLKE DDDDDDEYDK DGVPLPGFRF HPTDEELVGF YLRRKVDKKP LRIELIKQID  60
IYKYDPWDLP KVSKVGEKEW YFFCIRGRKY RNSIRPNRVT GSGFWKATGI DKPIYNSSLV  120
KEGDHDDHNH NNNDESLIIG LKKSLVYYRG SAGKGTKTDW MMHEFRLPSL TDSTTTTTTP  180
SPSKNHKLFD KSFPAHDAWA ICRIFKKTNS MAQRALSHSW VSSPLQGIIT PGDLLMSQTP  240
NFTHFSPQNI HLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-472621019168NO APICAL MERISTEM PROTEIN
1ut4_B8e-472621019168NO APICAL MERISTEM PROTEIN
1ut7_A8e-472621019168NO APICAL MERISTEM PROTEIN
1ut7_B8e-472621019168NO APICAL MERISTEM PROTEIN
4dul_A8e-472621019168NAC domain-containing protein 19
4dul_B8e-472621019168NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015879415.11e-100protein FEZ
SwissprotQ9FIW51e-83NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A2P5B1N49e-98A0A2P5B1N4_PARAD; NAC domain containing protein
STRINGAquca_002_00586.11e-95(Aquilegia coerulea)
STRINGVIT_14s0108g00860.t016e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.12e-80NAC family protein