PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00983.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-X1
Protein Properties Length: 1277aa    MW: 137444 Da    PI: 8.0616
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00983.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.15.7e-06463480118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CG+H+C++ CH GpC++C
  PK00983.1 463 CGRHRCEQMCHVGPCDQC 480
                ****************** PP
2zf-NF-X117.96.9e-06680698119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CG+H C++lCH G CppC 
  PK00983.1 680 CGQHACESLCHSGHCPPCL 698
                ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.05E-7288356No hitNo description
PROSITE profilePS500168.68295355IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.317298353IPR001841Zinc finger, RING-type
PROSITE patternPS013590298352IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.08E-5386446No hitNo description
SMARTSM004380.023408426IPR000967Zinc finger, NF-X1-type
PfamPF014229.7410425IPR000967Zinc finger, NF-X1-type
CDDcd060086.39E-12453501No hitNo description
SMARTSM004380.0014463482IPR000967Zinc finger, NF-X1-type
PfamPF014226.1E-5463480IPR000967Zinc finger, NF-X1-type
CDDcd060086.73E-9517559No hitNo description
SMARTSM004380.0025527546IPR000967Zinc finger, NF-X1-type
PfamPF014220.015527544IPR000967Zinc finger, NF-X1-type
CDDcd060081.52E-13575623No hitNo description
SMARTSM004381.6E-4585604IPR000967Zinc finger, NF-X1-type
PfamPF014227.9E-4587602IPR000967Zinc finger, NF-X1-type
CDDcd060084.58E-5632691No hitNo description
SMARTSM00438190642672IPR000967Zinc finger, NF-X1-type
PfamPF0142223642653IPR000967Zinc finger, NF-X1-type
CDDcd060081.78E-8670713No hitNo description
SMARTSM004384.1E-4680699IPR000967Zinc finger, NF-X1-type
PfamPF014221.3E-4680697IPR000967Zinc finger, NF-X1-type
CDDcd060082.21E-6727775No hitNo description
SMARTSM004380.026737755IPR000967Zinc finger, NF-X1-type
PfamPF014222.4737754IPR000967Zinc finger, NF-X1-type
SMARTSM004383.5790820IPR000967Zinc finger, NF-X1-type
PfamPF014220.12790805IPR000967Zinc finger, NF-X1-type
CDDcd060087.72E-5818867No hitNo description
PfamPF0142231822848IPR000967Zinc finger, NF-X1-type
SMARTSM004380.27829850IPR000967Zinc finger, NF-X1-type
PfamPF014241.3E-49631026IPR001374R3H domain
Gene3DG3DSA:3.30.70.3307.9E-510661120IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1277 aa     Download sequence    Send to blast
MSSNVRSERR DKPRSTAQAS ARREWVPRGA PMVTVVNQPS SNSTEDVNDS ILSSHGRFKA  60
NSSSNLNSGE NGNGGVPTHG GSSASHGHSR YRGNNSSHSN SAENGNDSVS ASHSHGRYRG  120
YNSSHSNSAE SGNDSVSASY SHNRYRGNNS SHSNSGEHGH GADPGGHSYQ YRGNANLHLN  180
STENGNGGDS SHSSAVSYGQ YKGNSNFHLN PAANGIGVDS TNSFAASHGR YKGNYSSKGQ  240
VSRPVNHRRE QQERGSESNE LESREKSTGK NGRFSKDSTL PQLVQEIQEK LMKGAVECMI  300
CYDMVRRSAP VWSCGSCYSI FHLNCIKKWA RAPTSVDLSV DNHGFNWRCP GCQSVQLTSS  360
KEIRYVCFCG KRTDPPSDLY LTPHSCGEPC GKPLERDVGR GGSKEDHCPH VCVLQCHPGP  420
CPPCKAFAPP RICSCGKKII TTRCSDRKSG LTCGQRCEKL LSCGRHRCEQ MCHVGPCDQC  480
EVEVNAACFC KKKVEAVLCA DMTVKGAVKA EDGVFSCNSL CEKKLNCGNH FCGEICHPGT  540
CGECELLPSK TKTCHCGKTV LKEERNSCLD PIPTCSKICQ KLLPCKKHSC EEVCHAGDCP  600
PCLVKVSQKC RCTSTSRIVE CYKTTSDENF SCDRTCGRKK SCGRHRCNER CCPLSNSSSS  660
HTGEWDPHFC SMSCGKKLRC GQHACESLCH SGHCPPCLET IFTDLICACG RTSIPPPLPC  720
GTPPPSCQLP CSVPQPCGHS ASHSCHFGDC PPCSVPVAKE CIGGHVVLRN IPCGSKDIRC  780
NKLCGKTRQC GMHACGRICH LPPCDSQMGS EPGLRSSCGQ TCGAPRRDCR HTCTAPCHPS  840
SLCPDTRCDF PVTITCLCGR ISASVPCDAG GNSGNYNADT VYEASVLQKL PAQLQPVEAT  900
NNNKIPLGQR KLMCDDECAK LERKRVLADA FDIASPNLDA LHFGENSSVS ELLGDLYRRD  960
PKWVISVEER CKYLVLGKNR GSSSGLKVHV FSPMLKEKRD AVRVIAERWK LAVNAAGWEP  1020
KRFIVVHVTP KSKVPPRILG VKGTTTVSAP QPPAFDPLVD MDPRLVVSFQ DLPRDADISA  1080
LVLRFGGECE LVWLNDKNAL AVFHDPARAA TAMRRLDHGS VYNGAVTFHA TTSGASSGSN  1140
SGTNAWGGGA GMVSKSNPWK KAIVQEDTWG GDEWSTSGSA DVQPSAWKKE TPLAASINRW  1200
SVLDSENATT SSSSSLSSLS KSFAGTKKAL GGGLHSSLGN APTPAAAPLV GNVTETETSE  1260
VAEDWEKAYD SSIEEEK
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010091735.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A2P5CHF90.0A0A2P5CHF9_PARAD; Zinc finger, FYVE/PHD-type
STRINGXP_010091735.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1