PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00926.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-YA
Protein Properties Length: 210aa    MW: 23258.7 Da    PI: 7.3641
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00926.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.35.3e-33114170158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep++VNaKQy++Il+RRq+Rak+e+e+k+ +ksrkpylheSRh hAlrR+Rg+gGrF
  PK00926.1 114 EEPVFVNAKQYHGILRRRQSRAKAESENKV-IKSRKPYLHESRHLHALRRARGCGGRF 170
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.9E-37112173IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.39113173IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.4E-28115170IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.1E-23116138IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860118138IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.1E-23147170IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MTSSVHELSD NCEAEEQQNH SDSQNQSSSP APGMPNTVMS APNVQYATSP QFGAGHAVAP  60
AAAYPYPDPY YRSIFAPYDA QPYPPQPYGG QPMVHLQLMG IQQAGLPLPS DAVEEPVFVN  120
AKQYHGILRR RQSRAKAESE NKVIKSRKPY LHESRHLHAL RRARGCGGRF LNAKKNEKHQ  180
DEEDTQVDKS QSHINLNSDK NERAPADGTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21113177165NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024022777.11e-128nuclear transcription factor Y subunit A-7
RefseqXP_024022778.11e-128nuclear transcription factor Y subunit A-7
RefseqXP_024022779.11e-128nuclear transcription factor Y subunit A-7
SwissprotQ84JP17e-75NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBLA0A2P5C1431e-125A0A2P5C143_PARAD; Nuclear transcription factor Y subunit A
STRINGXP_010098569.11e-118(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53793355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.25e-56nuclear factor Y, subunit A7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]