PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK00855.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 646aa MW: 67619.8 Da PI: 5.9547 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 2.1e-08 | 200 | 244 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed+ l+ av++ G g+W+ I r Rt+ q+ rw PK00855.1 200 RKPWSEAEDLELIAAVQKCGEGNWANILRGDFkGDRTASQLSQRW 244 789************************984223588888888888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.771 | 195 | 252 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-13 | 196 | 249 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.9E-12 | 197 | 249 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-9 | 199 | 250 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-7 | 200 | 244 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.94E-13 | 201 | 249 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 646 aa Download sequence Send to blast |
MVENAKKSMK GSISEEDIAT LLNRYSATAV LTLLQEVSNC QDLNIDWNAL VEKTSTGISN 60 ANEYQMLWRH LAYRQSLLEN FEDGTGAQPM DDDSDLEYEL EAFPTVSGEA LVEAAACVKV 120 LIASGASSDS IPCGSTVEAP LTINVPNGQS SKALEQPSCS IQGTNVTVPV SVQKQPVPSA 180 TIAETDLNGL ANANLQRRKR KPWSEAEDLE LIAAVQKCGE GNWANILRGD FKGDRTASQL 240 SQRWAIIRKR HGNLNLGGHS NGTQLSEAQL AARHAVSLAL NMPVKSLTAG ATATNGSAVT 300 NSINNSAGTN GTKNSLLVTG AAEASMGGNS SFLQSQKQAQ ENLTPKPSPV VSLGLTAKPR 360 LPLKKPVLKS SPSSDAMVRA TAVAAGARIA SPSDAASLLK AAQAKNAVHI MPTGSGSIKA 420 TGAISVLSES HPNVHYIRTG LASAPLSTYS AASPIASLNS SVKSIPPAVQ HTPASNAPSS 480 DVSSKQKNDV SNTPSVSEVP LKQAVKTEEI SVSELRPATK DQIQGDRACI SSNSLGEAVK 540 ENKVALPDPK VEVNGKSDVK SLVSPMNVTT SVNDQVTVVV QPKNRVSEKD TEMMSSVAEA 600 GVTGDAVKED ADNQNIDKME EDPSSAKAAT CSEKPEIVCK EANTKS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010086659.1 | 0.0 | uncharacterized protein LOC21386454 isoform X2 | ||||
TrEMBL | A0A2P5F1D7 | 0.0 | A0A2P5F1D7_TREOI; GAMYB transcription factor | ||||
STRING | XP_010086659.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3122 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 3e-76 | MYB_related family protein |