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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK00670.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 446aa MW: 49522.7 Da PI: 5.8204 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.9 | 2.7e-21 | 54 | 109 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++l+L+++qVk+WFqNrR+++k PK00670.2 54 KKKYHRHTPHQIQELESFFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMK 109 79999************************************************999 PP | |||||||
2 | START | 129 | 5.6e-41 | 264 | 446 | 2 | 164 |
HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 la +a++el+k+a+ae p+W kss e++n +e++++f++ + + +ea r+s vv+ ++ lve+l+d + +W e+++ +a+t+e is PK00670.2 264 LAMAAMDELLKLAQAEGPMWIKSSdgggkEMLNHEEYMRTFPPCIGakpngYVSEATRDSSVVIINSLALVETLMDAN-RWIEMFPclisRASTIEMISA 362 57799**************************************99999******************************.********************* PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164 g gal +m elq+lsplvp R f+R+++q+g+g+w++vdvS+d +++ + s+ +++lpSg+l++++++g+skv PK00670.2 363 GmggtrnGALGVMHVELQVLSPLVPlRPLKFIRFCKQHGDGVWAVVDVSIDINREALNAESYFQCRRLPSGCLVQDMPDGYSKV 446 *******************************************************988************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.6E-21 | 40 | 111 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 40 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.524 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-18 | 53 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.51E-20 | 54 | 111 | No hit | No description |
Pfam | PF00046 | 6.4E-19 | 54 | 109 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 32.297 | 254 | 446 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.57E-23 | 255 | 446 | No hit | No description |
CDD | cd08875 | 1.13E-90 | 258 | 446 | No hit | No description |
SMART | SM00234 | 5.3E-9 | 263 | 446 | IPR002913 | START domain |
Pfam | PF01852 | 1.5E-33 | 264 | 446 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MDTHGEMGLL GENFDLGMIG RIRDDGYESR SGSDNLEGAS GDDQDAGDDQ PPRKKKYHRH 60 TPHQIQELES FFKECPHPDE KQRLELSRRL SLETKQVKFW FQNRRTQMKT QLERHENIIL 120 RQENDKLRAE NNMIKDAMSN PMCNQCGGPA IPGQISFEEH QLRIENARLK DELSRICSLA 180 NKFLGRPLSS LVAPLPLPSS ASLELAMGRN GMGGLNVGPP LPMGLDLGDG VSSSAHMMPL 240 VKSSMGMSAF GNEIPFDRSM FIDLAMAAMD ELLKLAQAEG PMWIKSSDGG GKEMLNHEEY 300 MRTFPPCIGA KPNGYVSEAT RDSSVVIINS LALVETLMDA NRWIEMFPCL ISRASTIEMI 360 SAGMGGTRNG ALGVMHVELQ VLSPLVPLRP LKFIRFCKQH GDGVWAVVDV SIDINREALN 420 AESYFQCRRL PSGCLVQDMP DGYSKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028635.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2 | ||||
Swissprot | Q0WV12 | 1e-173 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A2P5CZI4 | 0.0 | A0A2P5CZI4_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010107411.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21740 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.2 | 1e-157 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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