PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PK00570.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

C2H2

Protein Properties

Length: 296aa MW: 31766.3 Da PI: 4.4417

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00570.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00054	269	292	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF + L++H + H PK00570.1 269 FSCTTCNRSFGSDIALQSHSKAkH 292 89*****************88766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.074	269	296	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	271	292	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
XFVVWCLGLV VKSGKSEVVE HDGSFLHIAK VCLGEIKKDA GSEPVILTAK VGDQKFVIGR 60 LSQKIPQLSV DLVFEKSFEL SHNCKNGSVH FTGYIVENSN SESESDSEDK NVPISIDNGV 120 VSGNLQSGED ENVAKSNKVL NSGQRGSSGP CGDEENDSSS DDDYNIEDEE QVNDDEKSSE 180 DEDESDDEDG SGDEESDDSE EDEGEEKKVD MGKKRPAETA TPATFKKAKL VTPEKTDSKS 240 GGSKVRSHVA TPHPAKQAKT TAAIFGKAFS CTTCNRSFGS DIALQSHSKA KHAPAK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024021650.1	1e-61	histone deacetylase HDT1
TrEMBL	A0A2P5C4V3	6e-90	A0A2P5C4V3_PARAD; Zinc finger C2H2 domain containing protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1025	30	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	3e-18	histone deacetylase 3