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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK00547.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | NAC | ||||||||
Protein Properties | Length: 241aa MW: 27658.1 Da PI: 5.3954 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 135 | 4.9e-42 | 13 | 141 | 2 | 129 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 p+GfrF+Pt+ee++++yLk k +gk+ ++ v+++vd + +ePw+Lp k +++++++ w+fF++rd ky++++r+nr+tksgyWk tgk ++++s +g PK00547.1 13 PVGFRFSPTEEEVINHYLKLKYQGKNDVVDPVMATVDFCAFEPWELPrKsMIESNDQVWWFFCPRDYKYNNSRRSNRTTKSGYWKITGKGQKIKSINGVI 112 89************************999888**************96347778899******************************************* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 +g k++Lvf++ + g+ t+Wvmhey+le PK00547.1 113 IGGKRILVFHR-SPCPGQGTEWVMHEYHLE 141 **********5.666789**********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-48 | 7 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.135 | 12 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-24 | 13 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSCRAIVLPT NAPVGFRFSP TEEEVINHYL KLKYQGKNDV VDPVMATVDF CAFEPWELPR 60 KSMIESNDQV WWFFCPRDYK YNNSRRSNRT TKSGYWKITG KGQKIKSING VIIGGKRILV 120 FHRSPCPGQG TEWVMHEYHL EPENPKPNQK SYVVCRLERK TDEKALKTTS PDYETGQPSG 180 GNTPDDDSLL SWKFQFPSVN QLNLESLLLP QNSPNDDFGF LTGNQDSFGD VEDFMDLFDD 240 P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-30 | 11 | 163 | 14 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028463.1 | 3e-58 | protein NTM1-like 9 | ||||
TrEMBL | A0A2P5FHB7 | 1e-62 | A0A2P5FHB7_TREOI; NAC domain containing protein | ||||
STRING | XP_010107113.1 | 5e-56 | (Morus notabilis) | ||||
STRING | XP_010107114.1 | 1e-56 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2065 | 25 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 5e-47 | NAC transcription factor-like 9 |