PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK00408.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | WRKY | ||||||||
Protein Properties | Length: 914aa MW: 98860 Da PI: 7.2636 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1.1e-31 | 486 | 542 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh PK00408.1 486 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHA 542 7****************************************.***************7 PP | |||||||
2 | WRKY | 102.4 | 2.6e-32 | 710 | 768 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+ PK00408.1 710 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 768 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14009 | 2.4E-21 | 1 | 160 | IPR025322 | Protein of unknown function DUF4228, plant |
PROSITE profile | PS50811 | 22.986 | 480 | 544 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.1E-27 | 484 | 544 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.42E-25 | 484 | 544 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-35 | 485 | 543 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-24 | 486 | 541 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-36 | 695 | 770 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-28 | 702 | 770 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.32 | 705 | 770 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-37 | 710 | 769 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.9E-25 | 711 | 768 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 914 aa Download sequence Send to blast |
MGNCQAIDAA ALVIQHPCGK IERLYWTISA SEVMRLNPGH YVSLIIPLPI SDQHQDKENQ 60 QQQQQQQQTE EIKTVRFTRV KLLRPTETLA LGHAYRLVTT QEVMKVLRAK KYAKAKKQVH 120 EKSESSVTAD NNNNEMSLSS SNKAMKTERS KQRLSSSSSS SSSAHLTIST XGKKFDSVLV 180 GKGALIFMAG LDDNVAIIGD WVPPSPSSRA FFSAMLGEDI GSRQFSGTTH NKTEDLFPNN 240 NNNNNNNFKE FREMGSFSSE QKSNSRGGGL VDRIAARAGF NAPRLNTESM RSSSSDLSLA 300 ASESRSPYLT IPPGLSPTTL LDSPVFLSNS LAQPSPTTGK FPFASSNGNT RSSTLIMEAS 360 DRNKESFFED INAGSFAFKP VPNSGPSSSF FLGTATKMTS AAAMPPHPHP SYPNIEMSVQ 420 SENSPPQSVG GGNEKDSSSD QKGGELELSP PLEEQGEEEG DQKGSGGDCS AGGGGGGGGG 480 GGTISEDGYN WRKYGQKQVK GSEYPRSYYK CTHPNCQVKK KVERSHEGHI TEIIYKGAHN 540 HAKPSHRRSG IGSSSNPLAD MRMDIQEQAG MQNGNVNVNC GGGDGDPVWA STQKGTVVDW 600 RNDSLEVTSS ASASAGPEYC NQSTSLQAQN GTQLESVDAV VDASSTFSND EDEDDRGTHG 660 SASLGYEGEE DESESKRRKL EAFATEMSGA TRAIREPRVV VQTTSEVDIL DDGYRWRKYG 720 QKVVKGNPNP RSYYKCTNAG CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNSSHVNS 780 GPSMQLQGSA STAMQSHVHR PEPSSQQLHN NMGRLSSYSL PRQQLGNFSF GMNQAGLANL 840 AMAGLGSMPP KLQGMPMNPY LAQQQQRQAN EMSFMLPKGE PKAEPISESA TGLNLSNASV 900 YQQFMSRLPL GPQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-37 | 484 | 771 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-37 | 484 | 771 | 8 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021826759.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_021826760.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Refseq | XP_021826761.1 | 0.0 | probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 0.0 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A314Y5Z5 | 0.0 | A0A314Y5Z5_PRUYE; Putative WRKY transcription factor 2 | ||||
STRING | XP_008246415.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9524 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-167 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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