PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK00408.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

WRKY

Protein Properties

Length: 914aa MW: 98860 Da PI: 7.2636

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00408.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.4	1.1e-31	486	542	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g Hnh PK00408.1 486 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGAHNHA 542 7**************************************.*************7 PP
2	WRKY	102.4	2.6e-32	710	768	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+ PK00408.1 710 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 768 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14009	2.4E-21	1	160	IPR025322	Protein of unknown function DUF4228, plant
PROSITE profile	PS50811	22.986	480	544	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.1E-27	484	544	IPR003657	WRKY domain
SuperFamily	SSF118290	9.42E-25	484	544	IPR003657	WRKY domain
SMART	SM00774	1.8E-35	485	543	IPR003657	WRKY domain
Pfam	PF03106	3.2E-24	486	541	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.3E-36	695	770	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-28	702	770	IPR003657	WRKY domain
PROSITE profile	PS50811	38.32	705	770	IPR003657	WRKY domain
SMART	SM00774	1.9E-37	710	769	IPR003657	WRKY domain
Pfam	PF03106	9.9E-25	711	768	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009942	Biological Process	longitudinal axis specification
GO:0030010	Biological Process	establishment of cell polarity
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 914 aa Download sequence Send to blast
MGNCQAIDAA ALVIQHPCGK IERLYWTISA SEVMRLNPGH YVSLIIPLPI SDQHQDKENQ 60 QQQQQQQQTE EIKTVRFTRV KLLRPTETLA LGHAYRLVTT QEVMKVLRAK KYAKAKKQVH 120 EKSESSVTAD NNNNEMSLSS SNKAMKTERS KQRLSSSSSS SSSAHLTIST XGKKFDSVLV 180 GKGALIFMAG LDDNVAIIGD WVPPSPSSRA FFSAMLGEDI GSRQFSGTTH NKTEDLFPNN 240 NNNNNNNFKE FREMGSFSSE QKSNSRGGGL VDRIAARAGF NAPRLNTESM RSSSSDLSLA 300 ASESRSPYLT IPPGLSPTTL LDSPVFLSNS LAQPSPTTGK FPFASSNGNT RSSTLIMEAS 360 DRNKESFFED INAGSFAFKP VPNSGPSSSF FLGTATKMTS AAAMPPHPHP SYPNIEMSVQ 420 SENSPPQSVG GGNEKDSSSD QKGGELELSP PLEEQGEEEG DQKGSGGDCS AGGGGGGGGG 480 GGTISEDGYN WRKYGQKQVK GSEYPRSYYK CTHPNCQVKK KVERSHEGHI TEIIYKGAHN 540 HAKPSHRRSG IGSSSNPLAD MRMDIQEQAG MQNGNVNVNC GGGDGDPVWA STQKGTVVDW 600 RNDSLEVTSS ASASAGPEYC NQSTSLQAQN GTQLESVDAV VDASSTFSND EDEDDRGTHG 660 SASLGYEGEE DESESKRRKL EAFATEMSGA TRAIREPRVV VQTTSEVDIL DDGYRWRKYG 720 QKVVKGNPNP RSYYKCTNAG CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNSSHVNS 780 GPSMQLQGSA STAMQSHVHR PEPSSQQLHN NMGRLSSYSL PRQQLGNFSF GMNQAGLANL 840 AMAGLGSMPP KLQGMPMNPY LAQQQQRQAN EMSFMLPKGE PKAEPISESA TGLNLSNASV 900 YQQFMSRLPL GPQM

Sequence ? help Back to Top

Protein Sequence Length: 914 aa Download sequence Send to blast

MGNCQAIDAA ALVIQHPCGK IERLYWTISA SEVMRLNPGH YVSLIIPLPI SDQHQDKENQ  60
QQQQQQQQTE EIKTVRFTRV KLLRPTETLA LGHAYRLVTT QEVMKVLRAK KYAKAKKQVH  120
EKSESSVTAD NNNNEMSLSS SNKAMKTERS KQRLSSSSSS SSSAHLTIST XGKKFDSVLV  180
GKGALIFMAG LDDNVAIIGD WVPPSPSSRA FFSAMLGEDI GSRQFSGTTH NKTEDLFPNN  240
NNNNNNNFKE FREMGSFSSE QKSNSRGGGL VDRIAARAGF NAPRLNTESM RSSSSDLSLA  300
ASESRSPYLT IPPGLSPTTL LDSPVFLSNS LAQPSPTTGK FPFASSNGNT RSSTLIMEAS  360
DRNKESFFED INAGSFAFKP VPNSGPSSSF FLGTATKMTS AAAMPPHPHP SYPNIEMSVQ  420
SENSPPQSVG GGNEKDSSSD QKGGELELSP PLEEQGEEEG DQKGSGGDCS AGGGGGGGGG  480
GGTISEDGYN WRKYGQKQVK GSEYPRSYYK CTHPNCQVKK KVERSHEGHI TEIIYKGAHN  540
HAKPSHRRSG IGSSSNPLAD MRMDIQEQAG MQNGNVNVNC GGGDGDPVWA STQKGTVVDW  600
RNDSLEVTSS ASASAGPEYC NQSTSLQAQN GTQLESVDAV VDASSTFSND EDEDDRGTHG  660
SASLGYEGEE DESESKRRKL EAFATEMSGA TRAIREPRVV VQTTSEVDIL DDGYRWRKYG  720
QKVVKGNPNP RSYYKCTNAG CTVRKHVERA SHDLKSVITT YEGKHNHDVP AARNSSHVNS  780
GPSMQLQGSA STAMQSHVHR PEPSSQQLHN NMGRLSSYSL PRQQLGNFSF GMNQAGLANL  840
AMAGLGSMPP KLQGMPMNPY LAQQQQRQAN EMSFMLPKGE PKAEPISESA TGLNLSNASV  900
YQQFMSRLPL GPQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-37	484	771	8	78	Probable WRKY transcription factor 4
2lex_A	6e-37	484	771	8	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269\|PubMed:21316593}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00071	PBM	Transfer from AT5G56270	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021826759.1	0.0	probable WRKY transcription factor 2
Refseq	XP_021826760.1	0.0	probable WRKY transcription factor 2
Refseq	XP_021826761.1	0.0	probable WRKY transcription factor 2
Swissprot	Q9FG77	0.0	WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBL	A0A314Y5Z5	0.0	A0A314Y5Z5_PRUYE; Putative WRKY transcription factor 2
STRING	XP_008246415.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9524	34	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-167	WRKY DNA-binding protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ueda M, et al. Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes Dev., 2017. 31(6): p. 617-627 [PMID:28404632] Lei R, et al. Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function. Plant J., 2017. 91(6): p. 962-976 [PMID:28635025]