PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK00291.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 765aa MW: 82993.8 Da PI: 4.4423 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.9 | 1.8e-11 | 134 | 175 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g+WT +E +ll++a +++ + W+ Ia+++ ++t qc++++ PK00291.3 134 GKWTDQETLLLLEALELYKEN-WNEIAEHVA-TKTKAQCILHFV 175 89*****************88.*********.**********95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50135 | 9.08 | 73 | 119 | IPR000433 | Zinc finger, ZZ-type |
SMART | SM00291 | 2.9E-9 | 73 | 117 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 2.83E-11 | 75 | 123 | No hit | No description |
Pfam | PF00569 | 1.1E-8 | 76 | 111 | IPR000433 | Zinc finger, ZZ-type |
CDD | cd02336 | 3.63E-22 | 77 | 121 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 79 | 105 | IPR000433 | Zinc finger, ZZ-type |
Gene3D | G3DSA:1.10.10.60 | 1.8E-8 | 130 | 174 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 22.079 | 131 | 182 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 9.72E-13 | 131 | 186 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-12 | 132 | 180 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-11 | 134 | 176 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00147 | 152 | 177 | No hit | No description |
Pfam | PF16495 | 2.4E-24 | 614 | 692 | IPR032451 | SMARCC, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 765 aa Download sequence Send to blast |
XFHPFPPTGP ATGGADDNVA SEKGSLADKL YHFETLQSSK PVIPKNNISA PAVSSRLFPE 60 SSIAEELIRP EGPAVEYHCN SCSADCSRKR YHCQKQADFD LCTDCFNNGK FDSGMSSSDF 120 ILMEPGEMQG LSGGKWTDQE TLLLLEALEL YKENWNEIAE HVATKTKAQC ILHFVQMPIE 180 DSFFDSCDDI EAVDPASSDK LNPKDALETN DSETAINVNQ STSSPMETSK EEMTEVQASQ 240 DTSKHEDTDK GKVDQDTSKL DDGSESKGGK DAEENCAMKA LKEAFEAVGY PLIPERPFSF 300 AEVGNPAMAL AAFLAHLVGP DVATASSHNS LKSLSGNSPG IELASRHCFL LEDPPNDIKE 360 PAGLPSVVAE ATNESFVNEK IEADLPKEDI PTDHCDKKSQ DSVLEAKTLD VPNVETSEIY 420 HSAKEQDIKA GSDEASGSVS TANKSSTPAI VKDQPLSTDD LQSEAEIPPS FVKESEAKTE 480 EPPEPRKTSK EVEMSETTPE KNELQETVPS DVLKEPTNSV DAQVDEPNDS LHSKNNKDQH 540 VTATSVGKPS SEEPRDIDMV PHSGNSEKNE PSQPAEPNVT GEKVVDLTKD RDKKNGMGIK 600 EDTKIDKIKC AAVSAISAAA VKAKLLADEE EDQIRQLSML LIEKQLLKLE TKLGFFNEME 660 NVLMRVREQL DRSRQRLYHE RAQIIAARLG LPASSSRGAS SSLPANRVNI NVTNSVQRPP 720 FSMVSQRPPL SRPMGTVAPT PSIPLSTTTA GSSIGPPSQE KLSSV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010096186.1 | 0.0 | SWI/SNF complex subunit SWI3D | ||||
TrEMBL | W9R169 | 0.0 | W9R169_9ROSA; SWI/SNF complex subunit SWI3D | ||||
STRING | XP_010096186.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5908 | 2 | 2 |