PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK00080.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family E2F/DP
Protein Properties Length: 161aa    MW: 18253.4 Da    PI: 9.9039
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK00080.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP39.97.2e-1310444271
    E2F_TDP 42 krRRiYDilNVLealnliek.....kekneirwkg 71
               k+RR+YDi+NVL+++nliek     ++k+++rw g
  PK00080.2 10 KVRRLYDIANVLSSMNLIEKthtsdTRKPAFRWLG 44
               79**********************99*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013720.0029144IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467857.35E-8845IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.3E-13945IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.1E-10944IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MLSIVVISAK VRRLYDIANV LSSMNLIEKT HTSDTRKPAF RWLGFGGRGQ AEHNVSAHES  60
VVTESKKRPF GADITNISFK RNKLDLGESL NMNFSKQKQV KQESYVDEID RITFDEDSNE  120
STKSYQFGPF APVTIARVGT SENNPRKVHD LEKLATIYRP X
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111971.11e-65E2F transcription factor-like E2FE
TrEMBLW9SXR32e-64W9SXR3_9ROSA; E2F transcription factor-like E2FE
STRINGXP_010111971.14e-65(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36683366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.18e-33DP-E2F-like 1