PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK00072.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

CAMTA

Protein Properties

Length: 979aa MW: 109639 Da PI: 7.0515

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK00072.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	157.5	2.7e-49	20	143	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvgg..........vevlycyYahseen 91 +e ++rwl+++ei++iL n+ k++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+h k+ +g v+vl+cyYah+e+n PK00072.1 20 QEaQHRWLRPTEICEILRNYLKFQLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHXKV--EGvqfnlllagsVDVLHCYYAHGEDN 117 5559***************************************************************975..555578999999********** PP CG-1 92 ptfqrrcywlLeeelekivlvhylev 117 ++fqrr+yw+L+ +le+ivlvhy+e PK00072.1 118 ESFQRRSYWMLDGQLEHIVLVHYREI 143 *********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.033	15	149	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.5E-69	18	144	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	7.0E-43	21	142	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.2E-6	448	536	IPR013783	Immunoglobulin-like fold
CDD	cd00102	5.40E-5	448	536	No hit	No description
SuperFamily	SSF81296	1.7E-17	449	535	IPR014756	Immunoglobulin E-set
Pfam	PF01833	6.9E-6	450	534	IPR002909	IPT domain
CDD	cd00204	1.34E-13	611	723	No hit	No description
SuperFamily	SSF48403	2.02E-15	611	726	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.4E-14	612	726	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.486	620	735	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.351	664	696	IPR002110	Ankyrin repeat
SMART	SM00248	0.017	664	693	IPR002110	Ankyrin repeat
SMART	SM00248	3500	703	732	IPR002110	Ankyrin repeat
SMART	SM00015	130	782	804	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	3.98E-8	819	887	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.021	836	858	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.876	837	866	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0011	838	857	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	4.1E-4	859	881	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.633	860	888	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	8.5E-5	862	881	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 979 aa Download sequence Send to blast
MAELKRFIPN QQLDLEQILQ EAQHRWLRPT EICEILRNYL KFQLTPDPPV RPPAGSLFLF 60 DRKALRYFRK DGHRWRKKKD GKTVKEAHXK VEGVQFNLLL AGSVDVLHCY YAHGEDNESF 120 QRRSYWMLDG QLEHIVLVHY REIKEGYKSG ISRMLPTPRP PFESFLNSFG QENSPAPTIQ 180 NSFASNSNRA DWNGPTSSLE DVDSGDNSGA SLTQTAFGSI SHNTSMLSDG VAGIGESSRN 240 PTDSWYPGSK LFHSAGSSLW AHGSTKHEEE SMLDQKCDVA VPGGADFIIH KLTDARLDIG 300 GKIHDIVSYS DRLITSTSIQ EAPSGPKREI QVSQEHGFDS TRAPFQFYSD PQMVATFTDE 360 VEKNSEDKDG TANNNESVEL KKLDSFGRWM DKEIGVDCDD SLMASDSGNY WNAIDAENED 420 KEVSSLSHHM QLEIDSLGPS LSQEQLFSIC DISPDWTYTG VETKVLIAGR FLGSKKHSSE 480 TKWGCMFGEI EVPAEVVIDN VIRCRTPLHA PGRVPFYVTC SNRLACSEVR EFEYREKPQV 540 IADNRAPEDE LRLQIRLGKL LNIGPERKSL NCSLDCDKCK IIDNVPSTRI KTSHLTSSDI 600 LIQNLLKDRY HQWLVFKIHE EGKGPNVFDD EGLGVIHLAA ALGYQWAIGP IIAAGVSPNF 660 RDARGRTALH WASCFGREET VVALVRLGGA PGAVDDPTPS FPGGQKAADL ASINGHKGIA 720 GYLAEADLTS HLSSLNINQN VADICDAVVS AEGSIDNDSK GFSSELDADN HFLKGSLAAF 780 RKSAHTAALI QAAFRNHLFR HKQLTKSGDN VSNDSVDLVV LDSLNKVQKS SHFEDYLHSA 840 AKKIQKKYRG WKGRKEFLDI RSRIVKIQAH VRGHQVRKQY KKVVWSVSIL EKLILRWRRK 900 GSGLRGFRVK KSTEDASRDT KRSDDYEYLV IGRKQKCAAV DKALARVKSM VRHPEAREQY 960 MRLVTNFEKF EIGEDENSA

Sequence ? help Back to Top

Protein Sequence Length: 979 aa Download sequence Send to blast

MAELKRFIPN QQLDLEQILQ EAQHRWLRPT EICEILRNYL KFQLTPDPPV RPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHXK VEGVQFNLLL AGSVDVLHCY YAHGEDNESF  120
QRRSYWMLDG QLEHIVLVHY REIKEGYKSG ISRMLPTPRP PFESFLNSFG QENSPAPTIQ  180
NSFASNSNRA DWNGPTSSLE DVDSGDNSGA SLTQTAFGSI SHNTSMLSDG VAGIGESSRN  240
PTDSWYPGSK LFHSAGSSLW AHGSTKHEEE SMLDQKCDVA VPGGADFIIH KLTDARLDIG  300
GKIHDIVSYS DRLITSTSIQ EAPSGPKREI QVSQEHGFDS TRAPFQFYSD PQMVATFTDE  360
VEKNSEDKDG TANNNESVEL KKLDSFGRWM DKEIGVDCDD SLMASDSGNY WNAIDAENED  420
KEVSSLSHHM QLEIDSLGPS LSQEQLFSIC DISPDWTYTG VETKVLIAGR FLGSKKHSSE  480
TKWGCMFGEI EVPAEVVIDN VIRCRTPLHA PGRVPFYVTC SNRLACSEVR EFEYREKPQV  540
IADNRAPEDE LRLQIRLGKL LNIGPERKSL NCSLDCDKCK IIDNVPSTRI KTSHLTSSDI  600
LIQNLLKDRY HQWLVFKIHE EGKGPNVFDD EGLGVIHLAA ALGYQWAIGP IIAAGVSPNF  660
RDARGRTALH WASCFGREET VVALVRLGGA PGAVDDPTPS FPGGQKAADL ASINGHKGIA  720
GYLAEADLTS HLSSLNINQN VADICDAVVS AEGSIDNDSK GFSSELDADN HFLKGSLAAF  780
RKSAHTAALI QAAFRNHLFR HKQLTKSGDN VSNDSVDLVV LDSLNKVQKS SHFEDYLHSA  840
AKKIQKKYRG WKGRKEFLDI RSRIVKIQAH VRGHQVRKQY KKVVWSVSIL EKLILRWRRK  900
GSGLRGFRVK KSTEDASRDT KRSDDYEYLV IGRKQKCAAV DKALARVKSM VRHPEAREQY  960
MRLVTNFEKF EIGEDENSA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024023491.1	0.0	calmodulin-binding transcription activator 2 isoform X1
Refseq	XP_024023492.1	0.0	calmodulin-binding transcription activator 2 isoform X2
Swissprot	Q6NPP4	1e-158	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A2P5F5K5	0.0	A0A2P5F5K5_TREOI; Serine/threonine protein kinase
STRING	XP_010099702.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12889	25	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	1e-159	signal responsive 1

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]