PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01008051G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family BES1
Protein Properties Length: 354aa    MW: 37443.2 Da    PI: 7.7514
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01008051G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8222044.5e-63131612148
           DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspess 93 
                      g++r ptw+ErEnn+rRERrRRai akiyaGLRa+Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp+  e+ + +g+sas sp+ss
  PH01008051G0020  13 GGTRVPTWRERENNRRRERRRRAIMAKIYAGLRAYGNYNLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPPpqERRDPIGRSASPSPCSS 106
                      789***********************************************************************999999************** PP

           DUF822  94 lqsslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlslvss 148
                      +q        +sp++sy++sp+ ssfps+ s+++i+l  +        +sl+p+l++ls++ss
  PH01008051G0020 107 YQ--------PSPRASYNPSPACSSFPSSGSSSQITLGGNnfiggvegSSLIPWLKNLSSSSS 161
                      **........9*********************9999998899****99*********987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056874.0E-6913157IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MTNGAGGGGG GLGGTRVPTW RERENNRRRE RRRRAIMAKI YAGLRAYGNY NLPKHCDNNE  60
VLKALCNEAG WTVEPDGTTY RKGCKPPPQE RRDPIGRSAS PSPCSSYQPS PRASYNPSPA  120
CSSFPSSGSS SQITLGGNNF IGGVEGSSLI PWLKNLSSSS SFASTSKFPQ LHHLYFNGGS  180
ISAPVTPPSS SPTRTHCIET DWENPSVQPP WAGANYTSLP NSTPPSPGHQ IAPDPAWLAG  240
FQISSAGPSS PTYNLVSHNP FGIFKETVAS SSRVCTPGQS GTCSPVMGGM PAHHDVHMVD  300
GAPDDFAFGS SNNGNNESPG LVKAWEGERI HEECASDELE LTLGSSKTRA DPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A1e-241690372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B1e-241690372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C1e-241690372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D1e-241690372446Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00248DAPTransfer from AT1G78700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01008051G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1012290.0AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641160.10.0protein BZR1 homolog 3
SwissprotQ5Z9E50.0BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLA0A0D9WR430.0A0A0D9WR43_9ORYZ; Uncharacterized protein
STRINGLPERR06G14930.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.18e-68BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]