 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PH01007654G0010 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
SBP |
| Protein Properties |
Length: 321aa MW: 35199 Da PI: 8.8728 |
| Description |
SBP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01007654G0010 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SBP | 47 | 6.7e-15 | 73 | 106 | 45 | 78 |
TTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 45 qCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+fh+lsefD++krsCrrrL++hn+rrrk+q+
PH01007654G0010 73 LFVQFHALSEFDQKKRSCRRRLSHHNARRRKPQP 106
5568***************************997 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MSAMILKSIG DKGSPCRKPF LVWKKCPTSL LTLTATLPPE TKDSTQEIHL GEKPFIRKDS 60
VCVYDCVSRK VVLFVQFHAL SEFDQKKRSC RRRLSHHNAR RRKPQPDVFS FGSAVLPSSL 120
FGNVFVSYKD DRGLISFVWN EAPLSHVKPL SYSSRSRPSD FKLSQVLDIG ERSTKVGAVN 180
GQIDLSESNL SDVFPTLCHN IDELLPIKGA DACGAASKLD GAPDLRRALS LLSASSWGST 240
DPAQQASSLI QFTDANQNGK MSSVSNGGNS NSPFWINGQP LAPESQVVQF TMDTGSTVFQ 300
DLERIKPAYE SALFSMNQIH *
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 85 | 102 | KKRSCRRRLSHHNARRRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP094509 | 0.0 | FP094509.1 Phyllostachys edulis cDNA clone: bphyst033c23, full insert sequence. |
