PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01006362G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 564aa    MW: 59364.7 Da    PI: 6.299
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01006362G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.59.8e-13456501655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+      k  + a++L +Av+YIk+Lq
  PH01006362G0030 456 SIAERVRRTRISERIRKLQELVPNM----EKQTNTADMLDLAVDYIKDLQ 501
                      689*********************7....467*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.199450500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-15453516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.87E-13454505No hitNo description
Gene3DG3DSA:4.10.280.104.9E-14455508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-10456501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-12456506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MASPAASVVV SLGCSAHIGQ FACSNLVTLV NKTSGGGCGL RFRDDRLGAR PQGCGMDDNR  60
IWTGLELSVG EEVDDEEGES EEDDTSTAAG GHDAGVGETG VFFGGEVVEF GEARQVMYGT  120
PVSKDLNLPA QPQLAAGVRT PPQMSFAGLL RYRSAPSTLL GEVCEDFLPV AGAGAGEGHR  180
PGSPDHAADT VIARFLAGHH PEVRDKPPRP AVAAAHFPEE DASMASQQQQ LMYQAQQQQV  240
VAMEGLYRTV SSVGTEQAAG GGGNSLLRQS SSPAGFLNHL NMDNGYGNML RAGMGGAGAG  300
AGGFRNGDAR LKGQLSFSSR QGSVMSQISE MGSEEFGGSS PEAGSNGAAA ARGYGSIPGY  360
PMGASSGWED PSPSPSPSLR SESLCGVKRP RDVPGSDVPA AQQAANGAKL THQFSLPNNS  420
KQALPEMAAI EKFLQFQDAV PCKIRAKRGC ATHPRSIAER VRRTRISERI RKLQELVPNM  480
EKQTNTADML DLAVDYIKDL QKQVKLPGEQ AAAVRWLIKL DGAMRHGRNA RLGEICTFLL  540
VLASEQLKCL CNVGQWSSSI IKM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01006362G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1209021e-99AK120902.1 Oryza sativa Japonica Group cDNA clone:J023030N23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310648.11e-149transcription factor bHLH130-like
RefseqXP_025804212.11e-150transcription factor bHLH130-like
RefseqXP_025804213.11e-150transcription factor bHLH130-like
TrEMBLA0A0A9VBR81e-164A0A0A9VBR8_ARUDO; Uncharacterized protein
STRINGSb02g028300.11e-148(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-40bHLH family protein