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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01005685G0080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | MYB | ||||||||
Protein Properties | Length: 339aa MW: 36493.2 Da PI: 6.4988 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.8e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd +l + ++++G g+W+++++ g+ R++k+c++rw +yl PH01005685G0080 14 RGLWSPEEDVKLMNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.7e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +++eE++l+v+++ +lG++ W+ Ia+ ++ gRt++++k++w++y PH01005685G0080 67 RGTFSQEEEDLIVHLHSMLGNK-WSQIAAQLP-GRTDNEVKNFWNSY 111 899*******************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-26 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.102 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.19E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.80E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.823 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.5E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.21E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MAKQSCCHKK KLRRGLWSPE EDVKLMNHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY 60 LRPDLKRGTF SQEEEDLIVH LHSMLGNKWS QIAAQLPGRT DNEVKNFWNS YIKKKLRERG 120 IDPVTHKPLA EVSGSRGGAA PTTSSACPAV FSDAELIPTT TPIQAPLVEV KPLMLDGLKM 180 SPDWSVAFAS NGMPSSLSGY QAPSLLAGCA FDLDGLQLQH CGAIPARVVP SASSSSTLTS 240 MAGLSPAAAD VEQCNNNVAG AILPWPELGP NNTVDAVSGH VDHYAGALDE LRWSDYFDGA 300 FQAAATQQGA LQGQCVYDGG KDDDDTVQFD VHGLSNWC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01005685G0080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036535 | 1e-167 | BT036535.2 Zea mays full-length cDNA clone ZM_BFb0120O20 mRNA, complete cds. | |||
GenBank | BT041077 | 1e-167 | BT041077.1 Zea mays full-length cDNA clone ZM_BFc0171O14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150799.1 | 1e-145 | transcription repressor MYB6-like | ||||
TrEMBL | A0A0A9ASW4 | 1e-164 | A0A0A9ASW4_ARUDO; Uncharacterized protein | ||||
STRING | Traes_7DL_AD4395F8F.1 | 1e-144 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3092 | 33 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G57560.1 | 9e-78 | myb domain protein 50 |