PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005548G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 301aa    MW: 32954 Da    PI: 9.8132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005548G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.1e-12130171247
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekA 47 
                      r +h++ E+rRR++iN++f+ L ellP++    ++K +K++ L +A
  PH01005548G0080 130 RSKHSATEQRRRSKINDRFQILSELLPHN----DQKRDKSSFLLEA 171
                      899*************************9....8*******99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.484128178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-13128184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-11128180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.90E-9130171No hitNo description
PfamPF000109.8E-10130171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-5134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MALIPNVRRN SSPATIRNSD ESSLITCTFV YSHELSGIEI ELWNLWALPF AVHNVAVASS  60
KPQQQLERKG VGGGGFMDAG DPAAARASTI VTASPRAARR ALRELTVRVE RMGGSCSGSA  120
GTDQLPNTLR SKHSATEQRR RSKINDRFQI LSELLPHNDQ KRDKSSFLLE ARRKYKSMRF  180
HAQNGAKKNA KIMPWANMYF CYFWENEQII KSGSSPGFPC TRKTDDNNNA VAAAAAAASG  240
AQDQEETDPI DHTSYKSAET PSPINVAEDR AVNGEMLNNP KLATDKGTNQ LMTSIFPRVA  300
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005548G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574682.15e-79transcription factor BIM2 isoform X1
RefseqXP_010235247.12e-79transcription factor BIM2 isoform X2
TrEMBLA0A0Q3IDZ81e-77A0A0Q3IDZ8_BRADI; Uncharacterized protein
TrEMBLA0A0Q3M2K24e-78A0A0Q3M2K2_BRADI; Uncharacterized protein
TrEMBLI1I8451e-77I1I845_BRADI; Uncharacterized protein
STRINGBRADI3G38970.12e-78(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.36e-19bHLH family protein