PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005158G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 280aa    MW: 31026.8 Da    PI: 6.6369
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005158G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72e-08113157554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h +rEr+RR+++ ++++ L +++ ++      K +K +i++ A  YI++L
  PH01005158G0070 113 HMMRERQRREKLSQSYADLYDMVSSR-----SKGDKNSIVQSAAIYIHEL 157
                      889**********************8.....6999999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.023108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-13108178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.07E-7112158No hitNo description
Gene3DG3DSA:4.10.280.105.0E-10112175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-6113157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-5114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSRAQGEETD EEMQMDSYYA FQDEAPFFAH AVPASPELPF GLIASPEPPL AVARQSAFQE  60
YYCAGPEPLS AGMRGGSGRN IHRRVMDVLG RMGGGEREEP QRGAVESSRG FRHMMRERQR  120
REKLSQSYAD LYDMVSSRSK GDKNSIVQSA AIYIHELKGA RDQLQRKNEE LKEKLLGHDS  180
QQQCVKVQLE VDEPSSSINS MIGALRCLKS MSVKTRGIRS GLSGHRLSTV INVETTIAAS  240
EVEKAVEEAL KEVERNQPDS NILSPGSRGL SQASHVQNVF
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005158G0070
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1018380.0FP101838.1 Phyllostachys edulis cDNA clone: bphyem112h05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752663.11e-123transcription factor BHLH148
SwissprotQ75KV91e-119BH148_ORYSJ; Transcription factor BHLH148
TrEMBLA0A0E0IPT81e-123A0A0E0IPT8_ORYNI; Uncharacterized protein
STRINGONIVA10G02990.31e-124(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.19e-24bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]