PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005137G0020
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 595aa    MW: 62870.2 Da    PI: 7.2495
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005137G0020genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30235294159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++tYeg+Hnh+
  PH01005137G0020 235 MNDGCQWRKYGQKTAKGNPCPRAYYRCTAAaGCPVRKQVQRCVDDMSILITTYEGTHNHP 294
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-32220294IPR003657WRKY domain
SuperFamilySSF1182902.88E-27228295IPR003657WRKY domain
PROSITE profilePS5081128.357230296IPR003657WRKY domain
SMARTSM007747.4E-37235295IPR003657WRKY domain
PfamPF031063.4E-27236294IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MIKGEKQLGI HEERLEDEMK EDDQVSDGIF FKSLLNQSST KKEVREDKLA STRAEMGEVR  60
EENERLKKML SRIVEDYRSL QMHFYDVLQQ GRAKKLADSL TTLPTDIEEP EFVSLSLGTS  120
TRKHNKEEKS TIGEGKENEL SFKIKEGYLS LGLSDCKVGA TNSDKVQPDV LTLSPEGSFV  180
DTKDDAVETT DQWPPSKMLK NLRSGGTETE DDIAPQPQVK KTRVSVRARC DAPMMNDGCQ  240
WRKYGQKTAK GNPCPRAYYR CTAAAGCPVR KQVQRCVDDM SILITTYEGT HNHPLSASAT  300
AMASTTSAAA SMLMSGSSTS LGFPATSSSA AGLHGLNLGL PAVADASKLP GGRPFFLPTG  360
AASITSTPSY PTITLDLTSP ATSQALSLSN RFSSSFTGSH NSRFPPTSFT FSGSGPSNLP  420
SATAWPAGAG YLSYGSSAAP YNGGKSSFEA ALSSINGRQG SVASLYQVPQ LQQKASANGG  480
AALGVLTDTI AKAITSDPSF HTALAAAITS CVGTQSASSA GGGEGSQGLK WWEHLGMGPS  540
STACSSALLA RLSSTEAAAA AQSSSGQMFL EPSLARSTSA STSPVENREH ISRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20222295173WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005137G0020
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811456.10.0probable WRKY transcription factor 72
TrEMBLA0A0E0L7R30.0A0A0E0L7R3_ORYPU; Uncharacterized protein
STRINGOPUNC06G02780.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.15e-66WRKY DNA-binding protein 72