PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01005012G0090
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 348aa    MW: 36648.9 Da    PI: 4.8719
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01005012G0090genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-14125176155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i   A++Y+k+L+
  PH01005012G0090 125 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS---YVQRGDQASIIGGAINYVKELE 176
                      79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.14E-15123180No hitNo description
Gene3DG3DSA:4.10.280.108.4E-15123180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.859124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-17124189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-11125176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-11130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MALEAVVFSE GFFGCHAMAA EGGGAWSWSS HGYGGMDGMM ELDGSNAYWV DAGASSSAMT  60
QGLEDPDGGS SVAVLPPGQG SGCGNADGAV VGQEGAVAAA VTPAAGRRKR RRARSVKNRE  120
EVESQRMTHI AVERNRRKQM NEYLAVLRSL MPASYVQRGD QASIIGGAIN YVKELEQMLQ  180
SLEAQRHVGQ ECPLAPGDAS AAVPFASFIT FPQYSMSAGL SPTTANTVSA VDDVNDVGGN  240
ADTDAEASGS KQSAVADIEV TMVENHANLK VLSRRRPRQL LRMVAGLQGH RLAVLHLNVA  300
SGGHMVLYSL SLKVEDDCQL SSVDDIATAV HRIVEAIEQE EQQQDCG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107111RKRRR
2125136RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01005012G0090
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076263e-99AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588613e-99HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156069.11e-123transcription factor bHLH94-like
SwissprotQ9C7T44e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLM7Z6881e-122M7Z688_TRIUA; Transcription factor bHLH96
STRINGTRIUR3_09788-P11e-123(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.19e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]