 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PH01004993G0070 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 325aa MW: 35365.9 Da PI: 4.3812 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01004993G0070 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 63.7 | 2.6e-20 | 73 | 126 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++t+eq++ Le+ Fe+++++ e+++eLA klgL+ rqV vWFqNrRa++k
PH01004993G0070 73 KKRRLTPEQVHLLERSFEEENKLEPERKTELALKLGLQPRQVAVWFQNRRARWK 126
5678*************************************************9 PP
|
| 2 | HD-ZIP_I/II | 128.5 | 2.7e-41 | 72 | 163 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
ekkrrl+ eqv+lLE+sFeee+kLeperK+ela +LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L ++++ L++++
PH01004993G0070 72 EKKRRLTPEQVHLLERSFEEENKLEPERKTELALKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHLLQSQVV 163
69**************************************************************************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 325 aa
Download sequence Send
to blast |
MESGRLIFNT SGSGAGQMLF LDCGAGGGGG MFHRGGRPVL GMEEGGRGVK RPFFTSPDEL 60
LEEEYYDEQL PEKKRRLTPE QVHLLERSFE EENKLEPERK TELALKLGLQ PRQVAVWFQN 120
RRARWKTKQL ERDFDRLKAS FDALRADHDA LLQDNHLLQS QVVSLTEKLQ EKEAVEGSVS 180
EAVDASVLPA ADVKVYSAEQ PVAEDAAVAA FEVQQVKAED RLSTGSGGSA VVDADALLGC 240
GGRVAAVDSS VESYFPGGDE YHDCVMGPVD HGAGGIQSEE DDGAGSDEGC SYYADDAGVL 300
FAGHGHHHHA DDDGDNGQIS WWMWN
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 120 | 128 | RRARWKTKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP094790 | 0.0 | FP094790.1 Phyllostachys edulis cDNA clone: bphylf043j04, full insert sequence. |
