PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

MYB

Protein Properties

Length: 241aa MW: 27174.2 Da PI: 12.1748

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01004865G0070	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv +++ +G g+W++ ++ g+ R++k+c++rw +yl PH01004865G0070 14 KGAWTKEEDQRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWMNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	55.8	1.1e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +Edel+++++ +lG++ W++Ia ++ gRt++++k++w+++ PH01004865G0070 67 RGNFTDDEDELIIRLHSLLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-23	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.056	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	2.25E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.11E-10	16	61	No hit	No description
PROSITE profile	PS51294	28.1	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.4E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.7E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.06E-11	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLVAYIR AHGEGCWRSL PKAAGLLRCG KSCRLRWMNY 60 LRPDLKRGNF TDDEDELIIR LHSLLGNKWS LIAGQLPGRT DNEIKNYWNT HIKRKLLARG 120 IDPQTHRPLL SGSPQRLARR RRSPSPSRRR RPRCSPSRSR RRRSSPRTMA AAAAAARRAR 180 GSRGAPTSTS TCLWGLRRAR RRSACATTSA SAAGRRAAVR LTARAYRGLD IRPLEEGQYI 240 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-29	14	116	7	108	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	148	162	RRRPRCSPSRSRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01004865G0070

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066834	0.0	AK066834.1 Oryza sativa Japonica Group cDNA clone:J013083O13, full insert sequence.
GenBank	AK104053	0.0	AK104053.1 Oryza sativa Japonica Group cDNA clone:001-023-G03, full insert sequence.
GenBank	D88617	0.0	D88617.1 Oryza sativa mRNA for OSMYB1, complete cds.
GenBank	EU837246	0.0	EU837246.1 Oryza sativa Japonica Group clone KCS051A09 myb transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638107.1	6e-94	transcription factor MYB8
Swissprot	P81393	2e-87	MYB08_ANTMA; Myb-related protein 308
Swissprot	Q38851	2e-87	MYB6_ARATH; Transcription repressor MYB6
TrEMBL	A0A0E0PMV1	1e-92	A0A0E0PMV1_ORYRU; Uncharacterized protein
TrEMBL	A2Y4Y5	1e-92	A2Y4Y5_ORYSI; Uncharacterized protein
TrEMBL	B9FIY3	1e-92	B9FIY3_ORYSJ; Uncharacterized protein
TrEMBL	O23889	1e-92	O23889_ORYSA; OSMYB1
TrEMBL	Q5TKI8	1e-92	Q5TKI8_ORYSJ; Myb transcription factor
STRING	ORUFI05G18670.1	2e-93	(Oryza rufipogon)
STRING	OS05T0429900-01	2e-93	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	4e-87	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]