PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004728G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 269aa    MW: 28632.4 Da    PI: 6.7034
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004728G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.89.5e-1460103755
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +Er RR+r+N+++  Lr+++P+      +K++Ka+i + A+eYI++Lq
  PH01004728G0030  60 VMERHRRRRLNDRLYALRSVVPNI-----TKMDKASIIKDAIEYIQQLQ 103
                      68*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.48253102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1757118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-1659117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-1659108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-1160103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.74E-1069107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDDGIDDYYW DCLDSEGLDS LYGGGHDGST VSGAYDGSSS PDAGHSSSVG AGAASNKTIV  60
MERHRRRRLN DRLYALRSVV PNITKMDKAS IIKDAIEYIQ QLQLQERHML AEISLLESAP  120
KTHDRLLITT PSCAAAAVVP DSCAGHVVSP TKKVRRALSF SSAAPPCCCA ASPPVEDLEV  180
RVSAAGDKVL VVSVACRQRR DAIAKVCRSL EGLRLAVIAA NVTSASGTVT HTAFVQRDEM  240
HQSEMKKMIE TAIAQLDVIG SPLSSTSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16572RRRLNDRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004728G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184164.12e-86transcription factor bHLH35-like
TrEMBLA0A3B6GZW21e-84A0A3B6GZW2_WHEAT; Uncharacterized protein
TrEMBLA0A453GEC86e-85A0A453GEC8_AEGTS; Uncharacterized protein
TrEMBLM8CG566e-85M8CG56_AEGTA; Transcription factor bHLH35
STRINGEMT261579e-86(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-36bHLH family protein