PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004715G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 359aa    MW: 37425.9 Da    PI: 5.5818
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004715G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-13145191354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h+e+ErrRR riN  +++Lr+llP+      +K +Ka+ L +++e++k+L
  PH01004715G0040 145 RNHSEAERRRRLRINGHLARLRSLLPNT-----TKTDKASLLAEVIEHVKEL 191
                      78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.425142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.04E-13145194No hitNo description
PfamPF000107.3E-11145191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-14145210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-14146209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-12148197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2601.6E-5235282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MWEGSGDHGS HEALLLQAAW GVGAHGGDHP SALLPWLGPA AAPPTYMIPN VPPAPLGAEM  60
PAAGGPFGVG GYCEGGGGVL GHQYGLFGLE TPQQHAVAGG GGAAPLQMGQ HGSRVVSGLL  120
GSLQAELGRM TAKETMDAKA LAASRNHSEA ERRRRLRING HLARLRSLLP NTTKTDKASL  180
LAEVIEHVKE LKRQTSAIMA ATGEAQQQQL MPTEADEMAV DAAADEEGRF VVRASLCCED  240
RPDLIPDIAG ALAALRLRAR RAEIATLGGR VRNVLLITAV EEEDEEGDDG RDCGNDDGDD  300
DRCAASHRRH ELVASIQEAL RGVMDRKVAS SDASSSGGSG SGSIKRQRMN GAQEQGSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004715G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020402268.11e-120transcription factor bHLH30
SwissprotQ9S7Y11e-63BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A1D6KP731e-119A0A1D6KP73_MAIZE; Transcription factor AIG1
STRINGSb07g021170.11e-107(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19183898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.16e-51bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]