PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

ZF-HD

Protein Properties

Length: 362aa MW: 37181.1 Da PI: 7.5014

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01004504G0130	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	101.9	4.3e-32	59	113	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e++ PH01004504G0130 59 GARYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESD 113 579***********************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	6.8E-29	60	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.1E-29	61	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.963	62	111	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	5.0E-22	64	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MDFDEHDEGD GDEEMAPMPV SSSYEAPPQP GLGGGGGPKP GDSGGRIRTP GGGGGGAGGA 60 RYRECLKNHA VGIGGHAVDG CGEFMAAGEE GSIDALRCAA CGCHRNFHRK ESDSPTGAGA 120 AEPAAVSPAA ITAYGAAPHH QFSPYYRTPA GYLHQQQHQM AAAAAGHTQR LLALPSTSHS 180 GRDEGDDMSG MVGPMVMGPM VGMSLGSARP PAPVPARSAS APSSRRNRRT RCWPSRSGSG 240 GASRSTTRPP CSSSARRCDD DDVGVVGKEE GMAICRFGSW ECVTKRDRNC HLEGVSASKG 300 GRGAPTAASN VKEAYMASIS TSKDPEKERV TDAPEGPLLA KEAVKAPTDA RKDPSGRSSV 360 AK

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MDFDEHDEGD GDEEMAPMPV SSSYEAPPQP GLGGGGGPKP GDSGGRIRTP GGGGGGAGGA  60
RYRECLKNHA VGIGGHAVDG CGEFMAAGEE GSIDALRCAA CGCHRNFHRK ESDSPTGAGA  120
AEPAAVSPAA ITAYGAAPHH QFSPYYRTPA GYLHQQQHQM AAAAAGHTQR LLALPSTSHS  180
GRDEGDDMSG MVGPMVMGPM VGMSLGSARP PAPVPARSAS APSSRRNRRT RCWPSRSGSG  240
GASRSTTRPP CSSSARRCDD DDVGVVGKEE GMAICRFGSW ECVTKRDRNC HLEGVSASKG  300
GRGAPTAASN VKEAYMASIS TSKDPEKERV TDAPEGPLLA KEAVKAPTDA RKDPSGRSSV  360
AK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01004504G0130

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012616	1e-118	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695882.1	1e-107	PREDICTED: zinc-finger homeodomain protein 2
Swissprot	A2YWA6	8e-87	ZHD2_ORYSI; Zinc-finger homeodomain protein 2
Swissprot	Q6ZB90	8e-87	ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBL	A0A0E0LW02	1e-105	A0A0E0LW02_ORYPU; Uncharacterized protein
STRING	OPUNC08G16150.1	1e-105	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	2e-24	mini zinc finger 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]