PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PH01004500G0050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 240aa MW: 27024.5 Da PI: 4.8786 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 68.1 | 1.6e-21 | 8 | 91 | 3 | 86 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++d lP + + +i+k++lP + ++++da++++ ec +efi +++se+++ c r ++kti+++ +l al +lGf +y+e++ v PH01004500G0050 8 KEDVSLPKSTMFKIIKEMLPPDVRVARDAQDLLVECCVEFINLLSSESNEVCSRGEKKTIAPEHVLKALEDLGFREYIEEVYVA 91 67999**************************************************************************98654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.2E-37 | 5 | 137 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.61E-34 | 9 | 137 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-19 | 12 | 76 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MDIVGKSKED VSLPKSTMFK IIKEMLPPDV RVARDAQDLL VECCVEFINL LSSESNEVCS 60 RGEKKTIAPE HVLKALEDLG FREYIEEVYV AYEQHKLDTL DSPKASKFTG VEMTEEEAVA 120 EQQRMFAEAR ARMNNGAAKP KEPEPESHQQ PQQPPQSQAQ LHPQAQQPPQ PQLQLHPQPQ 180 QPPQMLLHPQ PQQPLQPQPQ LHSQPQQPPQ LQLQPQLQAQ PQPQPQPLSQ PQTEHGLDS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 6e-34 | 9 | 130 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PH01004500G0050 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010235094.1 | 1e-109 | nuclear transcription factor Y subunit beta | ||||
Swissprot | P49592 | 4e-76 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | I1I6Q3 | 1e-108 | I1I6Q3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G34930.1 | 1e-108 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5720 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23090.4 | 2e-78 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
---|---|---|---|
|