PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004323G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 336aa    MW: 36220.1 Da    PI: 6.6647
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004323G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-1395146155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P +   + ++ + a+i+  A+e++k+L+
  PH01004323G0080  95 QRMTHIAVERNRRRQMNEYLAVLRSLMPDS---YVQRGDQASIVGGAIEFVKELE 146
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1893167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.07E-1593150No hitNo description
PROSITE profilePS5088815.39694145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-1595163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-1195146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-11100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTLIDALCSA SSDAALIYDT FNAASAAGFL FDNAAVFCDA GIVVGPAHVQ TAEAPGVAMA  60
AVASSGEKQA TSEPPKRKRR RRARSCKSRE ETESQRMTHI AVERNRRRQM NEYLAVLRSL  120
MPDSYVQRGD QASIVGGAIE FVKELEQQLQ SLEAQKRTLV HQHKAKCPAM PMHTSSTNTA  180
TCMESTSNCS SSVTEDASDA PPFAQFFTYP QYVWCHSPRD STAASASASA TLPAENRSGV  240
ADIEVNLVET HASVRIMSPR KAGQLLKMIA GLQALRLTVL HLNVTALDSL VLYSLSVKVE  300
EGCSLTTVDD IATAVHHMLC IVDAEVTSQQ LFAVGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17580KRKRRR
27581KRKRRRR
37680RKRRR
47683RKRRRRAR
595106RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004323G0080
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0947130.0FP094713.1 Phyllostachys edulis cDNA clone: bphyst031k14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623756.11e-147transcription factor bHLH96
SwissprotQ9C7T45e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0GY751e-146A0A0E0GY75_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NJH31e-146A0A0E0NJH3_ORYRU; Uncharacterized protein
TrEMBLA2X8H81e-146A2X8H8_ORYSI; Uncharacterized protein
STRINGORUFI02G30170.11e-147(Oryza rufipogon)
STRINGONIVA04G03690.11e-147(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]