 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PH01004198G0020 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
NF-YC |
| Protein Properties |
Length: 183aa MW: 20183.9 Da PI: 9.5798 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01004198G0020 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 107.1 | 1.1e-33 | 2 | 66 | 37 | 101 |
NF-YC 37 kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101
+misaeaPvl++kacelfilelt+rswlh eenkrrtl+++d+ aa+trtd+fdflvdi+pr+e
PH01004198G0020 2 RMISAEAPVLFAKACELFILELTIRSWLHVEENKRRTLQRNDVVAAITRTDVFDFLVDIMPREEA 66
8*************************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 183 aa
Download sequence Send
to blast |
MRMISAEAPV LFAKACELFI LELTIRSWLH VEENKRRTLQ RNDVVAAITR TDVFDFLVDI 60
MPREEAKEEP GSALGFAVGG GAAGVSGEGP AAGLPYYYPP MGQSAPMMPA WHVLLWDPAW 120
QQGAADVDQG VGSFGEEGQG FTVHGGGGHE TPRRARIRRR ALQPRQHYAG RRRRHGSRWK 180
QH*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 35 | 41 | RRTLQRN |
| 2 | 157 | 173 | RRRALQPRQHYAGRRRR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases at the end of the dark period, peaks in the beginning of the light period and gradually decreases during daytime. {ECO:0000269|PubMed:26542958}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP091952 | 0.0 | FP091952.1 Phyllostachys edulis cDNA clone: bphylf052o15, full insert sequence. |
