PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PH01004053G0220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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Family | GRAS | ||||||||
Protein Properties | Length: 546aa MW: 59017.1 Da PI: 7.7885 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 41.9 | 1.6e-13 | 251 | 308 | 2 | 60 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel 60 +lL++cA+av++ d + a +lL++++ +asp+gd++qRla +f+e+L+arla+++s+ PH01004053G0220 251 HTLLVHCAKAVTD-DRRSAGELLKEIKRHASPTGDATQRLAYCFAEGLEARLAGTGSQA 308 679********97.8999***********************************966554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 8.823 | 224 | 545 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.6E-11 | 251 | 308 | IPR005202 | Transcription factor GRAS |
Pfam | PF00854 | 1.7E-22 | 306 | 484 | IPR000109 | Proton-dependent oligopeptide transporter family |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006810 | Biological Process | transport | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005215 | Molecular Function | transporter activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MAPSAVFLDI TPTPHAGADG SGSSSHDHHQ VLSYISRILM EEGEEEDMDP EHHALLQAQQ 60 PFAQILSSSD TPASAFLADQ GGVLAGDTHT RRSSAQGTPS SAVFKFKGAD AVGSKELLPA 120 DKEYSTDLLI TAFFKGMEEA NKFLPTYNKL TTGGCGQSNE KSRTGRKERH GGGDELEAEV 180 CRTSKLVMAG PLEAGAREMF DQMMLNGYDI CFKGMEGLRI AMENETGKKK RKGRKNKARG 240 NRGAAEVVDL HTLLVHCAKA VTDDRRSAGE LLKEIKRHAS PTGDATQRLA YCFAEGLEAR 300 LAGTGSQAKT MERRMGKLEI PAASFGIFSI ITLTVWVAVY DRALVRPLSR LTGHARGLSL 360 RQRMGVGLAL FARVFAVAMA TAARTESVRR AAAIAEGLRD NGPNSGRTVR MSAMRLVPQH 420 CLTGLAEALN LIGQIEFYYS EFPKTMSSIG VSLLALGMGF GGVLGIAIVG IISAATGSNG 480 RDSWLSSNLN RGHYDYYYLV LAVLCVANLF YFFWCSWSYG EEGQYRVAAA EAVEETKEEQ 540 QNQKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4oh3_A | 2e-24 | 306 | 522 | 365 | 570 | Nitrate transporter 1.1 |
4oh3_B | 2e-24 | 306 | 522 | 365 | 570 | Nitrate transporter 1.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PH01004053G0220 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 2e-23 | GRAS family protein |