PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01004053G0220
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 546aa    MW: 59017.1 Da    PI: 7.7885
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01004053G0220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS41.91.6e-13251308260
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel 60 
                       +lL++cA+av++ d + a +lL++++ +asp+gd++qRla +f+e+L+arla+++s+ 
  PH01004053G0220 251 HTLLVHCAKAVTD-DRRSAGELLKEIKRHASPTGDATQRLAYCFAEGLEARLAGTGSQA 308
                      679********97.8999***********************************966554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.823224545IPR005202Transcription factor GRAS
PfamPF035145.6E-11251308IPR005202Transcription factor GRAS
PfamPF008541.7E-22306484IPR000109Proton-dependent oligopeptide transporter family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006810Biological Processtransport
GO:0016020Cellular Componentmembrane
GO:0005215Molecular Functiontransporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MAPSAVFLDI TPTPHAGADG SGSSSHDHHQ VLSYISRILM EEGEEEDMDP EHHALLQAQQ  60
PFAQILSSSD TPASAFLADQ GGVLAGDTHT RRSSAQGTPS SAVFKFKGAD AVGSKELLPA  120
DKEYSTDLLI TAFFKGMEEA NKFLPTYNKL TTGGCGQSNE KSRTGRKERH GGGDELEAEV  180
CRTSKLVMAG PLEAGAREMF DQMMLNGYDI CFKGMEGLRI AMENETGKKK RKGRKNKARG  240
NRGAAEVVDL HTLLVHCAKA VTDDRRSAGE LLKEIKRHAS PTGDATQRLA YCFAEGLEAR  300
LAGTGSQAKT MERRMGKLEI PAASFGIFSI ITLTVWVAVY DRALVRPLSR LTGHARGLSL  360
RQRMGVGLAL FARVFAVAMA TAARTESVRR AAAIAEGLRD NGPNSGRTVR MSAMRLVPQH  420
CLTGLAEALN LIGQIEFYYS EFPKTMSSIG VSLLALGMGF GGVLGIAIVG IISAATGSNG  480
RDSWLSSNLN RGHYDYYYLV LAVLCVANLF YFFWCSWSYG EEGQYRVAAA EAVEETKEEQ  540
QNQKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4oh3_A2e-24306522365570Nitrate transporter 1.1
4oh3_B2e-24306522365570Nitrate transporter 1.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01004053G0220
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-23GRAS family protein