PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003989G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 360aa    MW: 38258.2 Da    PI: 7.2685
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003989G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH314.2e-10103128127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +kt+lC+ f++ GtC+y  +C+FaHg+
  PH01003989G0030 103 FKTKLCCKFRA-GTCPYVTNCNFAHGM 128
                      69*********.*************95 PP
2zf-CCCH43.45.7e-14239264126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  PH01003989G0030 239 WKTRICNKWEMTGYCPFGSKCHFAHG 264
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.9E-14100135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-8100133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.028102129IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014102128IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7103128IPR000571Zinc finger, CCCH-type
SMARTSM003560.33175202IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-8175203IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.366175203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7175203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-17234268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-10235269IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-9238265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422238266IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-11239264IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDYTNAIHII PDAAGPDVWA NAAALPGGDA GIWATEDDYS QWNADTGLGG GGYGGDRNSS  60
QPQSRAGSEQ PPPGKKSRGG GPSGGGDGGG STNKSRAIGK MFFKTKLCCK FRAGTCPYVT  120
NCNFAHGMEE LRKPPSNWQE IVAAHEEATE QREEHQIPIM TSSSVVPVDN GSGRAYKGRH  180
CKKFYTEEGC PYGDACAFLH DEQSKARESV AISLSPSIGG GSYNSAAATN GPTQKPSNWK  240
TRICNKWEMT GYCPFGSKCH FAHGAAELHK YGGGLVDMDS RDAASTPDSK QAAVSAKAPA  300
ETAAASTAVP PHADVYHLGV QSQRSTIASQ RSGQVQRPIQ KWKGPDKISR IYGDWIDENE
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003989G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0983770.0FP098377.1 Phyllostachys edulis cDNA clone: bphyem211c22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573458.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ84UQ30.0C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A3B6RGK70.0A0A3B6RGK7_WHEAT; Uncharacterized protein
TrEMBLA0A446XHL60.0A0A446XHL6_TRITD; Uncharacterized protein
TrEMBLF2EAY20.0F2EAY2_HORVV; Predicted protein
STRINGBRADI3G16377.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-106C3H family protein