 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PH01003989G0030 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
C3H |
| Protein Properties |
Length: 360aa MW: 38258.2 Da PI: 7.2685 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01003989G0030 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 31 | 4.2e-10 | 103 | 128 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC+ f++ GtC+y +C+FaHg+
PH01003989G0030 103 FKTKLCCKFRA-GTCPYVTNCNFAHGM 128
69*********.*************95 PP
|
| 2 | zf-CCCH | 43.4 | 5.7e-14 | 239 | 264 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+kt++C+ + tG+C++G++C+FaHg
PH01003989G0030 239 WKTRICNKWEMTGYCPFGSKCHFAHG 264
8************************8 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 1.9E-14 | 100 | 135 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.79E-8 | 100 | 133 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.028 | 102 | 129 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0014 | 102 | 128 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.2E-7 | 103 | 128 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.33 | 175 | 202 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.8E-8 | 175 | 203 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.366 | 175 | 203 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.79E-7 | 175 | 203 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.1E-17 | 234 | 268 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 6.54E-10 | 235 | 269 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 7.1E-9 | 238 | 265 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.422 | 238 | 266 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.5E-11 | 239 | 264 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MDYTNAIHII PDAAGPDVWA NAAALPGGDA GIWATEDDYS QWNADTGLGG GGYGGDRNSS 60
QPQSRAGSEQ PPPGKKSRGG GPSGGGDGGG STNKSRAIGK MFFKTKLCCK FRAGTCPYVT 120
NCNFAHGMEE LRKPPSNWQE IVAAHEEATE QREEHQIPIM TSSSVVPVDN GSGRAYKGRH 180
CKKFYTEEGC PYGDACAFLH DEQSKARESV AISLSPSIGG GSYNSAAATN GPTQKPSNWK 240
TRICNKWEMT GYCPFGSKCH FAHGAAELHK YGGGLVDMDS RDAASTPDSK QAAVSAKAPA 300
ETAAASTAVP PHADVYHLGV QSQRSTIASQ RSGQVQRPIQ KWKGPDKISR IYGDWIDENE
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FP098377 | 0.0 | FP098377.1 Phyllostachys edulis cDNA clone: bphyem211c22, full insert sequence. |
