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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
PH01003968G0010 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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| Family |
MYB_related |
| Protein Properties |
Length: 215aa MW: 23759 Da PI: 10.1327 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01003968G0010 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 35.1 | 3.1e-11 | 35 | 94 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqky 47
r +WT++E++++++a ++ g +Wk+I + +g +t q++s+ qky
PH01003968G0010 35 RESWTEQEHDKFLEALQLVLGSfntglylqwlrfdrDWKKIEAFVG-SKTVIQIRSHAQKY 94
789***************99889***********************.*************9 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MISANAPPPP DASAAASGED ASKKVRKPYT ITKSRESWTE QEHDKFLEAL QLVLGSFNTG 60
LYLQWLRFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK NGTSEHVPPP RPKRKAAHPY 120
PQKASKSEPG YALKTDSSSM LRNSGMNATV SSWTHNSIPP VVASSMVKVM PDFAQVYSFL 180
GSVFDPSTSG HLQKLKEMNP IDVETYLAVT NFGS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP094853 | 1e-170 | FP094853.1 Phyllostachys edulis cDNA clone: bphyem208j03, full insert sequence. |
| Publications
? help Back to Top |
- Manfield IW, et al.
Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
[PMID:16845059] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Fogelmark K,Troein C
Rethinking transcriptional activation in the Arabidopsis circadian clock.
PLoS Comput. Biol., 2014. 10(7): p. e1003705
[PMID:25033214] - Xing H, et al.
LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
Plant Signal Behav, 2015. 10(3): p. e1010888
[PMID:25848708] - Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
Plant Physiol., 2017. 173(4): p. 2308-2322
[PMID:28254761]
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