PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003883G0030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 425aa    MW: 45131.3 Da    PI: 6.5567
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003883G0030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.21.9e-052643031255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  PH01003883G0030 264 RREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 303
                      9*****************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.661252302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.1E-4255308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-12263320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.37E-7264307No hitNo description
Gene3DG3DSA:4.10.280.101.2E-12265317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MEMNEKNNTD LEKNQHSGHN EHLSIHGPGF LPEALVASST NAMAAIGNPF PPGLWNRSSQ  60
NLGLGETNAN AMITGHPSSS LLGMLSAGVS PFAATSGFID CGTGFPCFNG NNLGAMISHP  120
FPSTQPLGSF HSVIEPSGEI ETTVGEGCKD ASLTGDGQQG DADKSHGVDA SNKELSKPEC  180
SGGAGQDEGP NVSCAKKRKR SGQDGGVKHV EEGSQQLATV AAKQKNHNDE KGEPKRPVMV  240
SGKSNGKQTK DNAGAPKEEY IHVRREKISE RMKFLQDLVP GCSKVTGKAV MLDEIINYVQ  300
SLQRQVEFLS MKLAAVNPTL DFNIEHILSK DFFQSQGTTA SSAFGFSLDI GHPHLHPPKL  360
SQAGLPSIVN PTDAFGRVTN APVGTSSTFK EPAHQMPNNF DRDFHNVIGM PFTPLNNQES  420
NGKP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003883G0030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563957.10.0transcription factor bHLH49
TrEMBLI1GZ240.0I1GZ24_BRADI; Uncharacterized protein
STRINGBRADI1G43650.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-54bHLH family protein