PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003862G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 281aa    MW: 30823.4 Da    PI: 6.0952
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003862G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09121168455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  PH01003862G0080 121 NHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 168
                      79************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-17115184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.76E-12115172No hitNo description
PROSITE profilePS5088815.491117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-17117182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6121168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10123173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAGFSHLPQQ MEYGITNASH SMPGFLFCQD HGAATTASTI PEDASMETSS VVLDTSPQGI  60
ASVEKNKKPR EDSASLNSAH SKDSKENTRN RGGKKHNKEM EEEAPKGYIH VRARRGQATD  120
NHSLAERVRR ERISERMRML QALVPGCDKV TGKALILDEI INYVQSLQNQ VEFLSMRIAS  180
LSPVLYGFGM DSDAFSDHTQ NIEGMFNEAV AMPISALNRA SPAPSQAIMD TNTSAPYSLQ  240
GQGGVSFSQD NGSYMMQTVG EPRQELFNQV VFNNYMCSFQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003862G0080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0661880.0AK066188.1 Oryza sativa Japonica Group cDNA clone:J013053A18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660828.11e-163PREDICTED: transcription factor bHLH76-like
TrEMBLJ3MZ341e-162J3MZ34_ORYBR; Uncharacterized protein
STRINGOB09G22630.11e-163(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-42bHLH family protein