PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003768G0010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 341aa    MW: 36938.8 Da    PI: 5.8198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003768G0010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12163210355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k+Lq
  PH01003768G0010 163 QDHILAERKRREKLSQRFIALSRIVPDL-----KKMDKASVLGDAIKYVKQLQ 210
                      67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.637160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-17163228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16164222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-12165213No hitNo description
SMARTSM003535.8E-14166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDALLEQYT EQQIAVAFGQ GEVGQAAAAA LMQQQQYEAG  60
ENRPSKAAKV NTRWDSCITE QGSPADSSSL TILSFGGHAD AAAVFAKAQG RAPSAAYYGA  120
SAAAPVKPKR EVGAAVPFPV KRSYDTMVAG AEPAKAPPAS QNQDHILAER KRREKLSQRF  180
IALSRIVPDL KKMDKASVLG DAIKYVKQLQ DRVTGLEEEA RRRPVETAVL VKKSQLSADD  240
DDGSSCDENF EGGEGRLPEI EARVSERTVL VKIHCENRKG ALITALSEVE SIGLTIMNTN  300
VLPFTTSSLD ITIMAMAGED FSLSVKDIVK KLNQAFKLSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14164219863Transcription factor MYC2
5gnj_B2e-14164219863Transcription factor MYC2
5gnj_E2e-14164219863Transcription factor MYC2
5gnj_F2e-14164219863Transcription factor MYC2
5gnj_G2e-14164219863Transcription factor MYC2
5gnj_I2e-14164219863Transcription factor MYC2
5gnj_M2e-14164219863Transcription factor MYC2
5gnj_N2e-14164219863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173ERKRRE
2169174RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003768G0010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1205390.0AK120539.1 Oryza sativa Japonica Group cDNA clone:J013129F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661241.10.0transcription factor bHLH18
TrEMBLA0A0E0KIG40.0A0A0E0KIG4_ORYPU; Uncharacterized protein
STRINGOPUNC03G29750.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-55bHLH family protein