PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

C3H

Protein Properties

Length: 686aa MW: 76407.8 Da PI: 6.8349

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01003742G0040	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.6e-06	98	110	14	26
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 CkyG++C+F+H+ PH01003742G0040 98 SCKYGASCRFSHD 110 7***********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.005	81	112	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	4.6E-75	329	572	IPR013785	Aldolase-type TIM barrel
CDD	cd02801	1.89E-96	333	565	No hit	No description
SuperFamily	SSF51395	2.62E-65	333	646	No hit	No description
Pfam	PF01207	2.0E-56	336	596	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	417	435	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence Send to blast
MAATTPDPCP ADVTVSSPPR PTPEELVARA VAPVKPAFLR PPPVREAPKE ESKASGGAGG 60 AVVTEKKSKR QLKRERKQEQ KSPSHLCTEV GKSGNVDSCK YGASCRFSHD IDAYLAQKPA 120 DLEGKCPFTV LEQLCPYGLT CRFLSTHKDS HVASENPPER NREINTLNKD IQKLLWKNKY 180 KFPKASAQIK LLGLKEVIKT KADAATDDQN AAHDYPEESC ELNGDDKTES LCSPPVNVEC 240 DSTLCEEMDK SEGEPLVGNS VPCVKPRPLK KSKVEVDEIH KHGADIHDTK AESEDPNLRN 300 VLEVPSNNPS SCRVDLISTP HLREKKIIDF REKLYLAPLT TVGNLPFRRL CKTLGADITC 360 GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGAYPDT VARAVELVDN ECSVDFIDIN 420 MGCPIDIVVN KGAGSSLLTK PMRIKSIVQA ASTITEKPLT VKVRTAFFEG RNRADSIVSD 480 INDWGASAIT IHGRSRQQRY SKLADWDYIY QCAQKASDYL HVIGNGDVFS FTDWNRHVSD 540 CSKISTCMIA RGALIKPWIF TEIKEQKHWD ITSGERFNIL KDFVHYALEH WGSDSKGVET 600 TRYFLLEWLS YTCRYIPVGL LDVIPQRLNW RLPSYYGRDD LETLMASDSA ADWIRISEML 660 LGKVPEGFTF TPKHKSNAYD RAENG*

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence Send to blast

MAATTPDPCP ADVTVSSPPR PTPEELVARA VAPVKPAFLR PPPVREAPKE ESKASGGAGG  60
AVVTEKKSKR QLKRERKQEQ KSPSHLCTEV GKSGNVDSCK YGASCRFSHD IDAYLAQKPA  120
DLEGKCPFTV LEQLCPYGLT CRFLSTHKDS HVASENPPER NREINTLNKD IQKLLWKNKY  180
KFPKASAQIK LLGLKEVIKT KADAATDDQN AAHDYPEESC ELNGDDKTES LCSPPVNVEC  240
DSTLCEEMDK SEGEPLVGNS VPCVKPRPLK KSKVEVDEIH KHGADIHDTK AESEDPNLRN  300
VLEVPSNNPS SCRVDLISTP HLREKKIIDF REKLYLAPLT TVGNLPFRRL CKTLGADITC  360
GEMAMCTNLL QGQASEWALL RRHSSEDLFG VQICGAYPDT VARAVELVDN ECSVDFIDIN  420
MGCPIDIVVN KGAGSSLLTK PMRIKSIVQA ASTITEKPLT VKVRTAFFEG RNRADSIVSD  480
INDWGASAIT IHGRSRQQRY SKLADWDYIY QCAQKASDYL HVIGNGDVFS FTDWNRHVSD  540
CSKISTCMIA RGALIKPWIF TEIKEQKHWD ITSGERFNIL KDFVHYALEH WGSDSKGVET  600
TRYFLLEWLS YTCRYIPVGL LDVIPQRLNW RLPSYYGRDD LETLMASDSA ADWIRISEML  660
LGKVPEGFTF TPKHKSNAYD RAENG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	6e-31	330	564	27	257	tRNA-dihydrouridine synthase B
6ei9_B	6e-31	330	564	27	257	tRNA-dihydrouridine synthase B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01003742G0040

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015691355.1	0.0	PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Swissprot	Q7XT07	0.0	DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A0D9ZGI3	0.0	A0A0D9ZGI3_9ORYZ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
TrEMBL	A0A0E0P4L9	0.0	A0A0E0P4L9_ORYRU; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	OGLUM04G00800.1	0.0	(Oryza glumipatula)
STRING	ORUFI04G00980.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10322	25	27

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]