PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003485G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 922aa    MW: 100477 Da    PI: 7.8187
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003485G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.4e-32510566259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vk+se+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+g+H h+
  PH01003485G0070 510 EDGYNWRKYGQKQVKNSEHPRSYYKCTHPNCCVKKKVERSQ-DGHITEIVYKGSHSHP 566
                      8****************************************.***************7 PP
2WRKY103.21.4e-32720778159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnhe
  PH01003485G0070 720 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCSVRKHVERASHDLKSVITTYEGKHNHE 778
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd016471.65E-31174No hitNo description
SuperFamilySSF566721.33E-771228No hitNo description
PfamPF000783.9E-9173IPR000477Reverse transcriptase domain
Gene3DG3DSA:3.30.70.2701.9E-5173No hitNo description
SuperFamilySSF541601.32E-5306375IPR016197Chromo domain-like
PROSITE profilePS5081122.366504568IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-28506568IPR003657WRKY domain
SuperFamilySSF1182908.63E-26507568IPR003657WRKY domain
SMARTSM007741.5E-35509567IPR003657WRKY domain
PfamPF031066.3E-24510566IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.4E-37705780IPR003657WRKY domain
SuperFamilySSF1182902.75E-28712780IPR003657WRKY domain
PROSITE profilePS5081137.769715780IPR003657WRKY domain
SMARTSM007741.0E-37720779IPR003657WRKY domain
PfamPF031067.3E-25721778IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MPFGLTNAPT AFQALMNEIL GPYLDDILIY SLSWSEHLRH VRMVFEALQQ HHLILKRTKC  60
IFGAKTVSYL GHVISANGVE MDQQKVVAVE DWPTPKSVRA IRAFFGLVGY YRHFIKDYGT  120
IATPLTQLLK KEAFRWSDEA SLAFQALKQA LATTLVLQLP DFTKLFTAEC DASGSGFGAV  180
LHQGGGPMAF FSRAIAPWHA KLAAYERELI GLVQAVRHWC PYLWGAFFPC PYRSLLSQVP  240
IGSAPVNYTA TSVGGRLGLA PAFTSSSPVV IKSSSSKTQS AFFGPYQILE RIGNVAYRLQ  300
LPPGTRIHNV FHVGLPKPFH GVPPAAPPSL PTLDHGRALP TPAKAIRGHL HRGIWQVLIT  360
WQGLPDFEAT WEEASEAQAS PTTGKLPFFM PPNVNSTILS VPEKAEYCLR DDCVFSFQPV  420
LRSEAPNFSI VDKGFGVHQN QSSANNNQQE LSLQSSSTAT NDVTEATIVK PKTSDSMLEN  480
DHPSPADERE ESEANQNGEY SSAPIIAPAE DGYNWRKYGQ KQVKNSEHPR SYYKCTHPNC  540
CVKKKVERSQ DGHITEIVYK GSHSHPLPPP NCRSSAPFSH FNDLQADGSE KFGPMPVLNT  600
ETSRENAPNG HFQDVHGGVT ETKMYASLNT AELADTSVME PREAVDVSST LSNEDDRATH  660
GTISLGCEGN EDETESKRRK MDISAATTTT TSTVDMGALA SRAVREPRVV VQTTSEVDIL  720
DDGYRWRKYG QKVVKGNPNP RSYYKCTNPG CSVRKHVERA SHDLKSVITT YEGKHNHEVP  780
AARNSGRPSS GSGVVTLAAQ QANGHHRRPE PAQGSLAQFG SAAAYGSIGT LPRDQIVAAA  840
GGFSFRMLPH GMAVPGPSLG TVMPAQMAGH PPAMQGYPRL VLPTEEVKVN PVARPGLPVA  900
NGTAEAAYQQ LMDRLSQGPQ M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ol8_A4e-371228185423Reverse transcriptase/ribonuclease H
4ol8_B4e-371228185423Reverse transcriptase/ribonuclease H
4ol8_E4e-371228185423Reverse transcriptase/ribonuclease H
4ol8_F4e-371228185423Reverse transcriptase/ribonuclease H
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003485G0070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820553.10.0probable WRKY transcription factor 2
RefseqXP_025820554.10.0probable WRKY transcription factor 2
RefseqXP_025820555.10.0probable WRKY transcription factor 2
RefseqXP_025820556.10.0probable WRKY transcription factor 2
TrEMBLA0A3L6PNC00.0A0A3L6PNC0_PANMI; Putative WRKY transcription factor 2
STRINGPavir.J35763.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.13e-99WRKY DNA-binding protein 2