PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003422G0070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 776aa    MW: 85200.3 Da    PI: 9.1544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003422G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.42.2e-17594640455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  PH01003422G0070 594 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIEYLKSLQ 640
                      6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000781.5E-9130277IPR000477Reverse transcriptase domain
CDDcd000833.36E-17585644No hitNo description
SuperFamilySSF474593.66E-21587656IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.635590639IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-22594649IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-14594640IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-18596645IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MGSLASAAHP LRLHALSLPS LLPSEAAALE APFLEDEIRI AIMVMPLEKT PGPDGFSRLF  60
YELCWPAIKG DLLNDIAKFH SGNAQNFHML NSANLTLLPK KDEPEADKDF RPISLIHSFS  120
KIITKLIWRG WITAILRTTT TSILFNGGRG PPLSFARGVR QGDPLFLALF IMAMDVLQAA  180
ARWATRRGLL SPLGRLVTEP RVSIYADDAV LFFSPSSQGC EVVRELLFIF GGASGLTSNL  240
AKSSITTIRC DDETETAVAA TLQCQRLRFP ITYLGLPLSI RSLRKSDIQP LVDKFSKKLA  300
GWKPKLLTPG GCVVLTRSTL MALSVHFMTI FRFPQWAIKL INCYSCRFEV RRRRRLVNFS  360
RDKNRDMDGN ARSTANQKKL IVTDNDLVEL LWHNGSVVAQ SQTHQRAPSD RGQSTSGLTG  420
EETAAWFPDT LDDALEKDLY TQLWHSIASA TPDGGMFPGP NSHPPPDFAH PARSPMRSGI  480
GSSWTGDICS TFCGSNQVPE VPMEGREGNA ALPSTGMRGA SMHDGAGTSS SGGSGSNFRG  540
SGLRSESAHA HKRKGRGRDD SDSRSEDAEC EATEETKSSL RRYASKRRSR AAEVHNLSER  600
RRRDRINEKM RALQELIPHC NKTDKASILD EAIEYLKSLQ MQVQIMWMTT GMAPMMIPGV  660
HQFVPPIAVG MNSACMPAAQ GLNQMPRVPY MNHSLPNHIP MKSSPAMNPL NVANQMQNIH  720
LREASNHILH PDGGQTAAPQ VSGQYANGPQ VAQQDQILDK ECNVDLHKGS LSGTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1585602KRRSRAAEVHNLSERRRR
2598603ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003422G0070
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633319.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015633322.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBLJ3LTE90.0J3LTE9_ORYBR; Uncharacterized protein
STRINGOB03G43250.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59060.18e-29phytochrome interacting factor 3-like 6