PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003295G0040
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 459aa    MW: 51217.2 Da    PI: 6.465
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003295G0040genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox283.7e-092182551954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  PH01003295G0040 218 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 255
                      665559******************************88 PP
2BELL123.67.7e-4082153172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e+qelq+k akLl +l+eVd++Yk+y++q+q+v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  PH01003295G0040  82 EKQELQNKTAKLLAMLDEVDRKYKHYYHQMQIVVSSFDMVAGSGAAKPYTAVALQTISRHFRCLKDAINDQI 153
                      689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.5E-566151IPR006563POX domain
PfamPF075261.8E-5112149IPR006563POX domain
PROSITE profilePS5007112.357196259IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-28198268IPR009057Homeodomain-like
CDDcd000867.63E-12199260No hitNo description
SMARTSM003891.6E-9199263IPR001356Homeobox domain
SuperFamilySSF466891.97E-17200265IPR009057Homeodomain-like
PfamPF059206.7E-18216255IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MKNMQSEASR AIRNSKFLKA AQELLDEVVS VWKSINQKAQ KEQVEAGKTD GKDSDGGSKS  60
EGVSSNPQES IANVAAELSA AEKQELQNKT AKLLAMLDEV DRKYKHYYHQ MQIVVSSFDM  120
VAGSGAAKPY TAVALQTISR HFRCLKDAIN DQINVIRKKL GEENSSGKEG KLTRLRYIDQ  180
QLRQQRAFQQ YGMLQQNAWR PQRGLPENSV SILRAWLFEH FLHPYPKDSE KLMLARQTGL  240
TRSQISNWFI NARVRLWKPM IEDMYKEEIG EAELDSNSSD NVPRSKDKVA SSEEKEDLKS  300
SMSQACQTSQ LGESKANIGM VSLGGAPASF HNEANPDDSF MNLMLKGQRP GETDGDLLHD  360
AVAHHSDESA RFMAYHLAEL GRYGNSNVSL TLGLQHTENS LSVPHTHEPG FAGVREEDIY  420
NTTAPVGVAA SSSEYESTHQ IDQRQRFEQS PLLHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16205262562Homeobox protein Meis2
3k2a_B3e-16205262562Homeobox protein Meis2
4xrs_A2e-16205262158Homeobox protein Meis1
4xrs_B2e-16205262158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01003295G0040
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0956040.0FP095604.1 Phyllostachys edulis cDNA clone: bphyem212j15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006650407.10.0PREDICTED: BEL1-like homeodomain protein 7
RefseqXP_006650408.10.0PREDICTED: BEL1-like homeodomain protein 7
TrEMBLJ3LRL00.0J3LRL0_ORYBR; Uncharacterized protein
STRINGOB03G36860.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-116BEL1-like homeodomain 6